2024
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Journal Articles
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B. T. Cox, B. Kaltenbacher, V. Nikolic, F. Lucka Existence of solutions to k-Wave models of nonlinear ultrasound propagation in biological tissue Journal Article Studies in Applied Mathematics, pp. e12771, 2024. Links | BibTeX @article{2024-Cox-SAM.pdf,
title = {Existence of solutions to k-Wave models of nonlinear ultrasound propagation in biological tissue},
author = {B. T. Cox and B. Kaltenbacher and V. Nikolic and F. Lucka},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Cox-SAM.pdf
},
doi = {10.1111/sapm.12771},
year = {2024},
date = {2024-09-25},
journal = {Studies in Applied Mathematics},
pages = {e12771},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
N. Huynh, E. Z. Zhang, O. Francies, F. Kuklis, T. J. Allen, J. Zhu, O. Abeyakoon, F. Lucka, M. M. Betcke, J. Jaros, S. R. Arridge, B. T. Cox, A. A. Plumb, P. C. Beard A fast all-optical 3D photoacoustic scanner for clinical vascular imaging Journal Article Nature Biomedical Engineering, 2024. Links | BibTeX @article{2024-Huynh-NatBiomedEng.pdf,
title = {A fast all-optical 3D photoacoustic scanner for clinical vascular imaging},
author = {N. Huynh and E. Z. Zhang and O. Francies and F. Kuklis and T. J. Allen and J. Zhu and O. Abeyakoon and F. Lucka and M. M. Betcke and J. Jaros and S. R. Arridge and B. T. Cox and A. A. Plumb and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Huynh-NatBiomedEng.pdf},
doi = {10.1038/s41551-024-01247-x},
year = {2024},
date = {2024-07-28},
journal = {Nature Biomedical Engineering},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
R. Xu, S. Bestmann, B. E. Treeby, E. Martin Strategies and safety simulations for ultrasonic cervical spinal cord neuromodulation Journal Article Physics in Medicine and Biology, 69 , pp. 125011, 2024. Links | BibTeX @article{2024-Xu-PMB.pdf,
title = {Strategies and safety simulations for ultrasonic cervical spinal cord neuromodulation},
author = {R. Xu and S. Bestmann and B. E. Treeby and E. Martin},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Xu-PMB.pdf},
doi = {10.1088/1361-6560/ad506f},
year = {2024},
date = {2024-05-24},
journal = {Physics in Medicine and Biology},
volume = {69},
pages = {125011},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. Martin, J-F. Aubry, M. Schafer, L. Verhagen, B. E. Treeby, K. Butts Pauly ITRUSST consensus on standardised reporting for transcranial ultrasound stimulation Journal Article Brain Stimulation, 17 , pp. 607-615, 2024. Links | BibTeX @article{2024-Martinetal-Standardised-reporting.pdf,
title = {ITRUSST consensus on standardised reporting for transcranial ultrasound stimulation},
author = {E. Martin and J-F. Aubry and M. Schafer and L. Verhagen and B. E. Treeby and K. Butts Pauly},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Martinetal-Standardised-reporting.pdf},
doi = {10.1016/j.brs.2024.04.013},
year = {2024},
date = {2024-04-18},
journal = {Brain Stimulation},
volume = {17},
pages = {607-615},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. Liang, B. E. Treeby, E. Martin Review of the Low-Temperature Acoustic Properties of Water, Aqueous Solutions, Lipids, and Soft Biological Tissues Journal Article IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 71 (5), pp. 607-620, 2024. Links | BibTeX @article{2024-liang,
title = {Review of the Low-Temperature Acoustic Properties of Water, Aqueous Solutions, Lipids, and Soft Biological Tissues},
author = {S. Liang and B. E. Treeby and E. Martin},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Liang-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2024.3381451},
year = {2024},
date = {2024-03-26},
journal = {IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control},
volume = {71},
number = {5},
pages = {607-620},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
J. Poimala, B. T. Cox, A. Hauptmann Compensating unknown speed of sound in learned fast 3D limited-view photoacoustic tomography Journal Article Photoacoustics, 37 , pp. 100597, 2024. Links | BibTeX @article{2024-Poimala-Photoacoustics.pdf,
title = {Compensating unknown speed of sound in learned fast 3D limited-view photoacoustic tomography},
author = {J. Poimala and B. T. Cox and A. Hauptmann},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Poimala-Photoacoustics.pdf
},
doi = {10.1016/j.pacs.2024.100597},
year = {2024},
date = {2024-02-16},
journal = {Photoacoustics},
volume = {37},
pages = {100597},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
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R. Xu, T. Brookshaw, E. Erro, M. Roberts, C. Selden, E. Martin Device Design for the Rapid Ultrasonic Rewarming of Alginate Beads and Cryoprotectant Solution to Improve Cryopreservation Recovery Conference 2024 IEEE International Ultrasonics Symposium (IUS)., 2024. Abstract | Links | BibTeX @conference{2024-Xu-IUS.pdf,
title = {Device Design for the Rapid Ultrasonic Rewarming of Alginate Beads and Cryoprotectant Solution to Improve Cryopreservation Recovery},
author = {R. Xu and T. Brookshaw and E. Erro and M. Roberts and C. Selden and E. Martin},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Xu-IUS.pdf},
year = {2024},
date = {2024-09-22},
booktitle = {2024 IEEE International Ultrasonics Symposium (IUS).},
abstract = {Ultrasonic rewarming is a new method for im- proving cryopreservation recovery. We developed an ultrasonic rewarming device and control algorithm for the rapid and repeat- able rewarming of cryopreserved biological media in cryovials. We characterised the device’s acoustic output with hydrophone measurements and rewarming rates with thermocouple measure- ments. Mean rewarming rates of 120◦C/min were achieved with cryopreserved alginate beads and cryoprotectant solution. The ultrasound exposures implemented free-field pressure amplitudes in the 3MPa range, corresponding to 100W electrical absorbed power. The exposure duration timing was accurate to ∼0.5s. The device will provide a platform for ultrasonic rewarming cell viability studies.},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
Ultrasonic rewarming is a new method for im- proving cryopreservation recovery. We developed an ultrasonic rewarming device and control algorithm for the rapid and repeat- able rewarming of cryopreserved biological media in cryovials. We characterised the device’s acoustic output with hydrophone measurements and rewarming rates with thermocouple measure- ments. Mean rewarming rates of 120◦C/min were achieved with cryopreserved alginate beads and cryoprotectant solution. The ultrasound exposures implemented free-field pressure amplitudes in the 3MPa range, corresponding to 100W electrical absorbed power. The exposure duration timing was accurate to ∼0.5s. The device will provide a platform for ultrasonic rewarming cell viability studies. |
2023
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Journal Articles
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T. Tarvainen, B. T. Cox Quantitative photoacoustic tomography: modeling and inverse problems Journal Article Journal of Biomedical Optics, 29 (S1), pp. S11509, 2023. Links | BibTeX @article{2023-Tarvainen-JBO.pdf,
title = {Quantitative photoacoustic tomography: modeling and inverse problems},
author = {T. Tarvainen and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Tarvainen-JBO.pdf},
doi = {10.1117/1.JBO.29.S1.S11509},
year = {2023},
date = {2023-12-20},
journal = {Journal of Biomedical Optics},
volume = {29},
number = {S1},
pages = {S11509},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. C. Klein-Flügge, E. F. Fouragan, E. Martin The importance of acoustic output measurement and monitoring for the replicability of transcranial ultrasonic stimulation studies Journal Article Brain Stimulation, 17 , pp. 32-34, 2023. Links | BibTeX @article{2024-Klein-Flugge-BrainStim.pdf,
title = {The importance of acoustic output measurement and monitoring for the replicability of transcranial ultrasonic stimulation studies},
author = {M. C. Klein-Flügge and E. F. Fouragan and E. Martin},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Klein-Flugge-BrainStim.pdf},
doi = {10.1016/j.brs.2023.12.002},
year = {2023},
date = {2023-12-06},
journal = {Brain Stimulation},
volume = {17},
pages = {32-34},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
R. Xu, B. E. Treeby, E. Martin Safety Review of Therapeutic Ultrasound for Spinal Cord Neuromodulation and Blood−Spinal Cord Barrier Opening Journal Article Ultrasound in Medicine and Biology, 50 , pp. 317-331, 2023. Links | BibTeX @article{2024-Xu-UMB.pdfb,
title = {Safety Review of Therapeutic Ultrasound for Spinal Cord Neuromodulation and Blood−Spinal Cord Barrier Opening},
author = {R. Xu and B. E. Treeby and E. Martin},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Xu-UMB.pdf},
doi = {10.1016/j.ultrasmedbio.2023.11.007},
year = {2023},
date = {2023-11-10},
journal = {Ultrasound in Medicine and Biology},
volume = {50},
pages = {317-331},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. N. Yaakub, T. A. White, J. Roberts, E. Martin, L. Verhagen, C. J. Stagg, S. Hall, E. F. Fouragan Transcranial focused ultrasound-mediated neurochemical and functional connectivity changes in deep cortical regions in humans Journal Article Nature Communications, 14 , pp. 5318, 2023. Links | BibTeX @article{2023-Yaakub-NatComm.pdf,
title = {Transcranial focused ultrasound-mediated neurochemical and functional connectivity changes in deep cortical regions in humans},
author = {S. N. Yaakub and T. A. White and J. Roberts and E. Martin and L. Verhagen and C. J. Stagg and S. Hall and E. F. Fouragan},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Yaakub-NatComm.pdf},
doi = {10.1038/s41467-023-40998-0},
year = {2023},
date = {2023-08-17},
journal = {Nature Communications},
volume = {14},
pages = {5318},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. Hosseini, O. Puonti, B. E. Treeby, L. G. Hanson, A. Thielscher A head template for computational dose modelling for transcranial focused ultrasound stimulation Journal Article NeuroImage, 277 , pp. 120227, 2023. Links | BibTeX @article{2023-Hosseini-NEUROIMAGE,
title = {A head template for computational dose modelling for transcranial focused ultrasound stimulation},
author = {S. Hosseini and O. Puonti and B. E. Treeby and L. G. Hanson and A. Thielscher},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Hosseini-NEUROIMAGE.pdf},
doi = {10.1016/j.neuroimage.2023.120227},
year = {2023},
date = {2023-08-15},
journal = {NeuroImage},
volume = {277},
pages = {120227},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. Kaupinmäki, B. T. Cox, S. R. Arridge Phase-insensitive versus phase-sensitive ultrasound absorption tomography in the frequency domain Journal Article Applied Mathematics in Science and Engineering, 31 (1), pp. 2252571, 2023. Abstract | Links | BibTeX @article{2023-Kaupinmaki-AMSE.pdf,
title = {Phase-insensitive versus phase-sensitive ultrasound absorption tomography in the frequency domain},
author = {S. Kaupinmäki and B. T. Cox and S. R. Arridge},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Kaupinmaki-AMSE.pdf},
doi = {10.1080/27690911.2023.2252571},
year = {2023},
date = {2023-08-14},
journal = {Applied Mathematics in Science and Engineering},
volume = {31},
number = {1},
pages = {2252571},
abstract = {The sensitivity of phase-sensitive detectors, such as piezoelectric detectors, becomes increasingly directional as the detector ele- ment size increases. In contrast, pyroelectric sensors, which are phase-insensitive, retain their omni-directionality even for large ele- ment sizes, although they have significantly poorer temporal resolu- tion. This study uses numerical models to examine whether phase- insensitive detectors can be used advantageously in ultrasound tomography, specifically absorption tomography, when the number of detectors is sparse. We present measurement models for phase- sensitive and phase-insensitive sensors and compare the quality of the absorption reconstructions between these sensor types based on relative error and image contrast metrics. We perform the inver- sion using synthetic data with a Jacobian-based linearized matrix inversion approach.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
The sensitivity of phase-sensitive detectors, such as piezoelectric detectors, becomes increasingly directional as the detector ele- ment size increases. In contrast, pyroelectric sensors, which are phase-insensitive, retain their omni-directionality even for large ele- ment sizes, although they have significantly poorer temporal resolu- tion. This study uses numerical models to examine whether phase- insensitive detectors can be used advantageously in ultrasound tomography, specifically absorption tomography, when the number of detectors is sparse. We present measurement models for phase- sensitive and phase-insensitive sensors and compare the quality of the absorption reconstructions between these sensor types based on relative error and image contrast metrics. We perform the inver- sion using synthetic data with a Jacobian-based linearized matrix inversion approach. |
M. Bakaric, O. Ogunlade, P. Miloro, B. Zeqiri, B. T. Cox, B. E. Treeby Characterisation of hydrophone sensitivity with temperature using a broadband laser-generated ultrasound source Journal Article Metrologia, 60 (5), pp. 055002, 2023. Links | BibTeX @article{2023-Bakaric-Metrologia,
title = {Characterisation of hydrophone sensitivity with temperature using a broadband laser-generated ultrasound source},
author = {M. Bakaric and O. Ogunlade and P. Miloro and B. Zeqiri and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Bakaric-Metrologia.pdf},
doi = {10.1088/1681-7575/ace3c3},
year = {2023},
date = {2023-07-28},
journal = {Metrologia},
volume = {60},
number = {5},
pages = {055002},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. Roberts, E. Martin, M. D. Brown, B. T. Cox, B. E. Treeby open-UST: An Open-Source Ultrasound Tomography Transducer Array System Journal Article IEEE Transactions of Ultrasonics, Ferroelectrics, and Frequency Control, 70 (7), pp. 782-791, 2023. Links | BibTeX @article{2023-Roberts-IEEETUFFC,
title = {open-UST: An Open-Source Ultrasound Tomography Transducer Array System},
author = {M. Roberts and E. Martin and M. D. Brown and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Roberts-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2023.3280635},
year = {2023},
date = {2023-05-31},
journal = {IEEE Transactions of Ultrasonics, Ferroelectrics, and Frequency Control},
volume = {70},
number = {7},
pages = {782-791},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
A. Stanziola, J. A. Pineda-Pardo, B. E. Treeby Transcranial ultrasound simulation with uncertainty estimation Journal Article JASA Express Letters, 3 (5), pp. 052001, 2023. Links | BibTeX @article{2023-Stanziola-JASAEL-Uncertainty,
title = {Transcranial ultrasound simulation with uncertainty estimation},
author = {A. Stanziola and J. A. Pineda-Pardo and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Stanziola-JASAEL-2},
doi = {10.1121/10.0019380},
year = {2023},
date = {2023-05-11},
journal = {JASA Express Letters},
volume = {3},
number = {5},
pages = {052001},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. A. Kipergil, E. Martin, S. J. Mathews, I. Papakonstantinou, E. J. Alles, A. E. Desjardins Fiber-optic hydrophone for detection of high-intensity ultrasound waves Journal Article Optics Letters, 48 (10), pp. 2615-2618, 2023. Abstract | Links | BibTeX @article{2023-Kipergiletal-OL.pdf,
title = {Fiber-optic hydrophone for detection of high-intensity ultrasound waves},
author = {E. A. Kipergil and E. Martin and S. J. Mathews and I. Papakonstantinou and E. J. Alles and A. E. Desjardins},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Kipergiletal-OL.pdf},
doi = {10.1364/OL.488862},
year = {2023},
date = {2023-05-08},
journal = {Optics Letters},
volume = {48},
number = {10},
pages = {2615-2618},
abstract = {Fiber-optic hydrophones (FOHs) are widely used to detect high-intensity focused ultrasound (HIFU) fields. The most common type consists of an uncoated single-mode fiber with a perpendicularly cleaved end face. The main disadvantage of these hydrophones is their low signal-to-noise ratio (SNR). To increase the SNR, signal averaging is performed, but the associated increased acquisition times hinder ultrasound field scans. In this study, with a view to increasing SNR while withstanding HIFU pressures, the bare FOH paradigm is extended to include a partially reflective coating on the fiber end face. Here, a numerical model based on the general transfer-matrix method was implemented. Based on the sim- ulation results, a single-layer, 172 nm TiO2 -coated FOH was fabricated. The frequency range of the hydrophone was veri- fied from 1 to 30 MHz. The SNR of the acoustic measurement with the coated sensor was 21 dB higher than that of the uncoated one. The coated sensor successfully withstood a peak positive pressure of 35 MPa for 6000 pulses.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Fiber-optic hydrophones (FOHs) are widely used to detect high-intensity focused ultrasound (HIFU) fields. The most common type consists of an uncoated single-mode fiber with a perpendicularly cleaved end face. The main disadvantage of these hydrophones is their low signal-to-noise ratio (SNR). To increase the SNR, signal averaging is performed, but the associated increased acquisition times hinder ultrasound field scans. In this study, with a view to increasing SNR while withstanding HIFU pressures, the bare FOH paradigm is extended to include a partially reflective coating on the fiber end face. Here, a numerical model based on the general transfer-matrix method was implemented. Based on the sim- ulation results, a single-layer, 172 nm TiO2 -coated FOH was fabricated. The frequency range of the hydrophone was veri- fied from 1 to 30 MHz. The SNR of the acoustic measurement with the coated sensor was 21 dB higher than that of the uncoated one. The coated sensor successfully withstood a peak positive pressure of 35 MPa for 6000 pulses. |
A. Stanziola, S. R. Arridge, B. T. Cox, B. E. Treeby A learned Born series for highly-scattering media Journal Article JASA Express Letters, 3 (5), pp. 052401, 2023. Links | BibTeX @article{2023-Stanziola-JASAEL,
title = {A learned Born series for highly-scattering media},
author = {A. Stanziola and S. R. Arridge and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Stanziola-JASAEL.pdf},
doi = {10.1121/10.0017937},
year = {2023},
date = {2023-05-01},
journal = {JASA Express Letters},
volume = {3},
number = {5},
pages = {052401},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. Rajagopal, T. J. Allen, M. Berendt, D. Lin, S. Alam, D. J. Richardson, B. T. Cox The effect of source backing materials and excitation pulse durations on laser-generated ultrasound waveforms Journal Article J. Acoust. Soc. Am., 153 (5), pp. 2649, 2023. Links | BibTeX @article{2023-Rajagopal-JASA,
title = {The effect of source backing materials and excitation pulse durations on laser-generated ultrasound waveforms},
author = {S. Rajagopal and T. J. Allen and M. Berendt and D. Lin and S. Alam and D. J. Richardson and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Rajagopal-JASA.pdf},
doi = {10.1121/10.0019306},
year = {2023},
date = {2023-05-01},
journal = {J. Acoust. Soc. Am.},
volume = {153},
number = {5},
pages = {2649},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. D. Brown, B. T. Cox, B. E. Treeby Binary volume acoustic holograms Journal Article Physical Review Applied, 19 , pp. 044032, 2023. Abstract | Links | BibTeX @article{2023-Brown-PRA.pdf,
title = {Binary volume acoustic holograms},
author = {M. D. Brown and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Brown-PRA.pdf},
doi = {10.1103/PhysRevApplied.19.044032},
year = {2023},
date = {2023-04-11},
journal = {Physical Review Applied},
volume = {19},
pages = {044032},
abstract = {In recent years, high-resolution additive manufacturing has enabled a diverse range of low-cost methods for ultrasonic wave-front shaping. Acoustic holograms, in particular, allow for the generation of arbitrary diffraction-limited acoustic fields at megahertz frequencies from single-element transducers. These are phase plates that function as direct acoustic analogs to thin optical holograms. In this work, it is shown that, by using multiple polymer three-dimensional (3D) printing, two-material (binary) acoustic analogs to “thick” or volume optical holograms can also be generated. First, an analytic approach for designing a volume hologram that diffracts a set of input fields onto a desired set of output fields is briefly summarized. Next, a greedy-optimization approach based on random downhill binary search able to account for the constraints imposed by the chosen fabrication method is introduced. Finally, an experimental test case designed to diffract the field generated by a 2.54-cm planar lead zirconate titanate (PZT) transducer onto eight distinct patterns dependent on the direction of the incident field is used to validate the approach and the design method. Field scans of the eight target fields demonstrate that acoustic analogs of optical volume holograms can be generated using multipolymer printing and that these allow the multiplexing of distinct fields onto different incident field directions.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
In recent years, high-resolution additive manufacturing has enabled a diverse range of low-cost methods for ultrasonic wave-front shaping. Acoustic holograms, in particular, allow for the generation of arbitrary diffraction-limited acoustic fields at megahertz frequencies from single-element transducers. These are phase plates that function as direct acoustic analogs to thin optical holograms. In this work, it is shown that, by using multiple polymer three-dimensional (3D) printing, two-material (binary) acoustic analogs to “thick” or volume optical holograms can also be generated. First, an analytic approach for designing a volume hologram that diffracts a set of input fields onto a desired set of output fields is briefly summarized. Next, a greedy-optimization approach based on random downhill binary search able to account for the constraints imposed by the chosen fabrication method is introduced. Finally, an experimental test case designed to diffract the field generated by a 2.54-cm planar lead zirconate titanate (PZT) transducer onto eight distinct patterns dependent on the direction of the incident field is used to validate the approach and the design method. Field scans of the eight target fields demonstrate that acoustic analogs of optical volume holograms can be generated using multipolymer printing and that these allow the multiplexing of distinct fields onto different incident field directions. |
J. Zhu, N. Huynh, O. Ogunlade, R. Ansari, F. Lucka, B. T. Cox, P. C. Beard Mitigating the Limited View Problem in Photoacoustic Tomography for a Planar Detection Geometry by Regularized Iterative Reconstruction Journal Article IEEE Transactions on Medical Imaging, 42 (9), pp. 2603-2615, 2023. Links | BibTeX @article{2023-Zhu-IEEETMI.pdf,
title = {Mitigating the Limited View Problem in Photoacoustic Tomography for a Planar Detection Geometry by Regularized Iterative Reconstruction},
author = {J. Zhu and N. Huynh and O. Ogunlade and R. Ansari and F. Lucka and B. T. Cox and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Zhu-IEEETMI.pdf},
doi = {10.1109/TMI.2023.3271390},
year = {2023},
date = {2023-03-21},
journal = {IEEE Transactions on Medical Imaging},
volume = {42},
number = {9},
pages = {2603-2615},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
A. Stanziola, S. R. Arridge, B. T. Cox, B. E. Treeby j-Wave: An open-source differentiable wave simulator Journal Article SoftwareX, 22 , pp. 101338, 2023. Abstract | Links | BibTeX @article{2023-Stanziola-SoftwareX,
title = {j-Wave: An open-source differentiable wave simulator},
author = {A. Stanziola and S. R. Arridge and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Stanziola-SoftwareX.pdf
},
doi = {10.1016/j.softx.2023.101338},
year = {2023},
date = {2023-02-07},
journal = {SoftwareX},
volume = {22},
pages = {101338},
abstract = {We present an open-source differentiable acoustic simulator, j-Wave, which can solve time-varying and time-harmonic acoustic problems. It supports automatic differentiation, which is a program transformation technique that has many applications, especially in machine learning and scientific computing. j-Wave is composed of modular components that can be easily customized and reused. At the same time, it is compatible with some of the most popular machine learning libraries, such as JAX and TensorFlow. The accuracy of the simulation results for known configurations is evaluated against the widely used k-Wave toolbox and a cohort of acoustic simulation software. j-Wave is available from https://github.com/ucl-bug/jwave.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
We present an open-source differentiable acoustic simulator, j-Wave, which can solve time-varying and time-harmonic acoustic problems. It supports automatic differentiation, which is a program transformation technique that has many applications, especially in machine learning and scientific computing. j-Wave is composed of modular components that can be easily customized and reused. At the same time, it is compatible with some of the most popular machine learning libraries, such as JAX and TensorFlow. The accuracy of the simulation results for known configurations is evaluated against the widely used k-Wave toolbox and a cohort of acoustic simulation software. j-Wave is available from https://github.com/ucl-bug/jwave. |
T. Nandi, A. Johnstone, E. Martin, C. Zich, R. Cooper, S. Bestmann, T. O. Bergmann, B. E. Treeby, C. J. Stagg Ramped V1 transcranial ultrasonic stimulation modulates but does not evoke visual evoked potentials Journal Article Brain Stimulation, 16 , pp. 553-555, 2023. Links | BibTeX @article{2023-Nandi-BS.pdf,
title = {Ramped V1 transcranial ultrasonic stimulation modulates but does not evoke visual evoked potentials},
author = {T. Nandi and A. Johnstone and E. Martin and C. Zich and R. Cooper and S. Bestmann and T. O. Bergmann and B. E. Treeby and C. J. Stagg},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Nandi-BS.pdf},
doi = {10.1016/j.brs.2023.02.004},
year = {2023},
date = {2023-01-26},
journal = {Brain Stimulation},
volume = {16},
pages = {553-555},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
R. Xu, B. E. Treeby, E. Martin Experiments and simulations demonstrating the rapid ultrasonic rewarming of frozen tissue cryovials Journal Article J. Acoust. Soc. Am., 153 (1), pp. 517-528, 2023. Links | BibTeX @article{2023-Xu-JASA,
title = {Experiments and simulations demonstrating the rapid ultrasonic rewarming of frozen tissue cryovials},
author = {R. Xu and B. E. Treeby and E. Martin},
url = {http://bug.medphys.ucl.ac.uk/papers/2023-Xu-JASA.pdf},
doi = {10.1121/10.0016886},
year = {2023},
date = {2023-01-02},
journal = {J. Acoust. Soc. Am.},
volume = {153},
number = {1},
pages = {517-528},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2022
|
Journal Articles
|
P. Kleparnik, P. Zemcik, B. E. Treeby, J. Jaros On-the-Fly Calculation of Time-Averaged Acoustic Intensity in Time-Domain Ultrasound Simulations Using a k-Space Pseudospectral Method Journal Article IEEE Transactions of Ultrasonics, Ferroelectrics, and Frequency Control, 69 (10), pp. 2917-2929, 2022. Links | BibTeX @article{2022-Kleparnik-IEEETUFFC,
title = {On-the-Fly Calculation of Time-Averaged Acoustic Intensity in Time-Domain Ultrasound Simulations Using a k-Space Pseudospectral Method},
author = {P. Kleparnik and P. Zemcik and B. E. Treeby and J. Jaros},
url = {http://bug.medphys.ucl.ac.uk/papers/2022-Kleparnik-IEEETUFFC.pdf
},
doi = {10.1109/TUFFC.2022.3199173},
year = {2022},
date = {2022-08-09},
journal = {IEEE Transactions of Ultrasonics, Ferroelectrics, and Frequency Control},
volume = {69},
number = {10},
pages = {2917-2929},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. Miscouridou, J. A. Pineda-Pardo, C. J. Stagg, B. E. Treeby, A. Stanziola Classical and Learned MR to Pseudo-CT Mappings for Accurate Transcranial Ultrasound Simulation Journal Article IEEE Transactions of Ultrasonics, Ferroelectrics, and Frequency Control, 69 (10), pp. 2896-2905, 2022. Links | BibTeX @article{2022-Miscouridou-IEEETUFFC,
title = {Classical and Learned MR to Pseudo-CT Mappings for Accurate Transcranial Ultrasound Simulation},
author = {M. Miscouridou and J. A. Pineda-Pardo and C. J. Stagg and B. E. Treeby and A. Stanziola},
url = {http://bug.medphys.ucl.ac.uk/papers/2022-Miscouridou-IEEETUFFC.pdf
},
doi = {10.1109/TUFFC.2022.3198522},
year = {2022},
date = {2022-08-06},
journal = {IEEE Transactions of Ultrasonics, Ferroelectrics, and Frequency Control},
volume = {69},
number = {10},
pages = {2896-2905},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
J-F. Aubry, O. Bates, C. Boehm, K. Butts Pauly, D. Christensen, C. Cueto, P. Gélat, L. Guasch, J. Jaros, Y. Jing, R. Jones, N. Liu, P. Marty, H. Montanaro, E. Neufeld, S. Pichardo, G. Pinton, A. Pulkkinen, A. Stanziola, A. Thielscher, B. E. Treeby, E. van t'Wout Benchmark problems for transcranial ultrasound simulation: Intercomparison of compressional wave models Journal Article J. Acoust. Soc. Am., 152 (2), pp. 1004–1019, 2022. Links | BibTeX @article{2022-Aubry-JASA,
title = {Benchmark problems for transcranial ultrasound simulation: Intercomparison of compressional wave models},
author = {J-F. Aubry and O. Bates and C. Boehm and K. Butts Pauly and D. Christensen and C. Cueto and P. Gélat and L. Guasch and J. Jaros and Y. Jing and R. Jones and N. Liu and P. Marty and H. Montanaro and E. Neufeld and S. Pichardo and G. Pinton and A. Pulkkinen and A. Stanziola and A. Thielscher and B. E. Treeby and E. van t'Wout},
url = {http://bug.medphys.ucl.ac.uk/papers/2022-Aubry-JASA},
doi = {10.1121/10.0013426},
year = {2022},
date = {2022-07-22},
journal = {J. Acoust. Soc. Am.},
volume = {152},
number = {2},
pages = {1004–1019},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
J. Gröhl, L. Hacker, B. T. Cox, K. Dreher, S. Morscher, A. Rakotondrainibe, F. Varray, L. Yip, W. Vogt, S. Bohndiek, IPASC The IPASC data format: A consensus data format for photoacoustic imaging Journal Article Photoacoustics, 26 , pp. 100339, 2022. Abstract | Links | BibTeX @article{2022-Groehl-PA,
title = {The IPASC data format: A consensus data format for photoacoustic imaging},
author = {J. Gröhl and L. Hacker and B. T. Cox and K. Dreher and S. Morscher and A. Rakotondrainibe and F. Varray and L. Yip and W. Vogt and S. Bohndiek and IPASC },
url = {http://bug.medphys.ucl.ac.uk/papers/2022-Groehl-PA.pdf},
doi = {10.1016/j.pacs.2022.100339},
year = {2022},
date = {2022-02-17},
journal = {Photoacoustics},
volume = {26},
pages = {100339},
abstract = {Photoacoustic imaging (PAI) is an emerging modality that has shown promise for improving patient management in a range of applications. Unfortunately, the current lack of uniformity in PAI data formats compromises inter-user data exchange and comparison, which impedes: technological progress; effective research collaboration; and efforts to deliver multi-centre clinical trials. To overcome this challenge, the International Photoacoustic Standardisation Consortium (IPASC) has established a data format with a defined consensus metadata structure and developed an open-source software application programming interface (API) to enable conversion from proprietary file formats into the IPASC format. The format is based on Hierarchical Data Format 5 (HDF5) and designed to store photoacoustic raw time series data. Internal quality control mechanisms are included to ensure completeness and consistency of the converted data. By unifying the variety of proprietary data and metadata definitions into a consensus format, IPASC hopes to facilitate the exchange and comparison of PAI data.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Photoacoustic imaging (PAI) is an emerging modality that has shown promise for improving patient management in a range of applications. Unfortunately, the current lack of uniformity in PAI data formats compromises inter-user data exchange and comparison, which impedes: technological progress; effective research collaboration; and efforts to deliver multi-centre clinical trials. To overcome this challenge, the International Photoacoustic Standardisation Consortium (IPASC) has established a data format with a defined consensus metadata structure and developed an open-source software application programming interface (API) to enable conversion from proprietary file formats into the IPASC format. The format is based on Hierarchical Data Format 5 (HDF5) and designed to store photoacoustic raw time series data. Internal quality control mechanisms are included to ensure completeness and consistency of the converted data. By unifying the variety of proprietary data and metadata definitions into a consensus format, IPASC hopes to facilitate the exchange and comparison of PAI data. |
F. Lucka, M. Perez Liva, B. E. Treeby, B. T. Cox High resolution 3D ultrasonic breast imaging by time-domain full waveform inversion Journal Article Inverse Problems, 38 (2), pp. 025008, 2022. Links | BibTeX @article{2022-Lucka-IP,
title = {High resolution 3D ultrasonic breast imaging by time-domain full waveform inversion},
author = {F. Lucka and M. {Perez Liva} and B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2022-Lucka-IP.pdf},
doi = {10.1088/1361-6420/ac3b64},
year = {2022},
date = {2022-01-01},
journal = {Inverse Problems},
volume = {38},
number = {2},
pages = {025008},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
M. Roberts, E. Martin, M. D. Brown, B. T. Cox, B. E. Treeby Matching Layer Deposition for an Open-Source Ultrasound Tomography System: Inter-Element Variation in Frequency Response Conference 2022 IEEE International Ultrasonics Symposium (IUS), 2022. Links | BibTeX @conference{2022-Roberts-IEEEIUS,
title = {Matching Layer Deposition for an Open-Source Ultrasound Tomography System: Inter-Element Variation in Frequency Response},
author = {M. Roberts and E. Martin and M. D. Brown and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2022-Roberts-IEEEIUS.pdf},
doi = {10.1109/IUS54386.2022.9957739},
year = {2022},
date = {2022-10-10},
booktitle = {2022 IEEE International Ultrasonics Symposium (IUS)},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2021
|
Journal Articles
|
M. Bakaric, P. Miloro, A. Javaherian, B. T. Cox, B. E. Treeby, M. D. Brown Measurement of the ultrasound attenuation and dispersion in 3D-printed photopolymer materials from 1 to 3.5 MHz Journal Article J. Acoust. Soc. Am., 150 (4), pp. 2798-2805, 2021. Links | BibTeX @article{2021-Bakaric-JASA,
title = {Measurement of the ultrasound attenuation and dispersion in 3D-printed photopolymer materials from 1 to 3.5 MHz},
author = {M. Bakaric and P. Miloro and A. Javaherian and B. T. Cox and B. E. Treeby and M. D. Brown},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Bakaric-JASA.pdf},
doi = {10.1121/10.0006668},
year = {2021},
date = {2021-10-14},
journal = {J. Acoust. Soc. Am.},
volume = {150},
number = {4},
pages = {2798-2805},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
A. Javaherian, B. T. Cox Ray-based inversion accounting for scattering for biomedical ultrasound tomography Journal Article Inverse Problems, 37 (11), pp. 115003, 2021. Links | BibTeX @article{2021-Javaherian-IP,
title = {Ray-based inversion accounting for scattering for biomedical ultrasound tomography},
author = {A. Javaherian and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Javaherian-IP.pdf},
doi = {10.1088/1361-6420/ac28ed},
year = {2021},
date = {2021-10-13},
journal = {Inverse Problems},
volume = {37},
number = {11},
pages = {115003},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. Singh, E. Martin, H. F. J. Tregidgo, B. E. Treeby, S. Bandula Prostatic calcifications: Quantifying occurrence, radiodensity, and spatial distribution in prostate cancer patients Journal Article Urologic Oncology: Seminars and Original Investigations, 39 (10), pp. 728.e1-e6, 2021. Links | BibTeX @article{2021-Singh-UO,
title = {Prostatic calcifications: Quantifying occurrence, radiodensity, and spatial distribution in prostate cancer patients},
author = {S. Singh and E. Martin and H. F. J. Tregidgo and B. E. Treeby and S. Bandula},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Singh-UO.pdf},
doi = {10.1016/j.urolonc.2020.12.028},
year = {2021},
date = {2021-10-01},
journal = {Urologic Oncology: Seminars and Original Investigations},
volume = {39},
number = {10},
pages = {728.e1-e6},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
A. Johnstone, T. Nandi, E. Martin, S. Bestmann, C. J. Stagg, B. E. Treeby A range of pulses commonly used for human transcranial ultrasound stimulation are clearly audible Journal Article Brain Stimulation, 14 (5), pp. P1353-1355, 2021. Links | BibTeX @article{2021-Johnstone-BS,
title = {A range of pulses commonly used for human transcranial ultrasound stimulation are clearly audible},
author = {A. Johnstone and T. Nandi and E. Martin and S. Bestmann and C. J. Stagg and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Johnstone-BS.pdf},
doi = {10.1016/j.brs.2021.08.015},
year = {2021},
date = {2021-09-01},
journal = {Brain Stimulation},
volume = {14},
number = {5},
pages = {P1353-1355},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
A. Stanziola, S. R. Arridge, B. T. Cox, B. E. Treeby A Helmholtz equation solver using unsupervised learning: Application to transcranial ultrasound Journal Article J. Comput. Phys., 441 , pp. 110430, 2021. Links | BibTeX @article{2021-Stanziola-JCP,
title = {A Helmholtz equation solver using unsupervised learning: Application to transcranial ultrasound},
author = {A. Stanziola and S. R. Arridge and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Stanziola-JCP.pdf},
doi = {10.1016/j.jcp.2021.110430},
year = {2021},
date = {2021-05-21},
journal = {J. Comput. Phys.},
volume = {441},
pages = {110430},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. Bakaric, P. Fromme, A. Hurrell, S. Rajagopal, P. Miloro, B. Zeqiri, B. T. Cox, B. E. Treeby Measurement of the temperature-dependent output of lead zirconate titanate transducers Journal Article Ultrasonics, 114 , pp. 106378, 2021. Links | BibTeX @article{2021-Bakaric-ULTRASONICS,
title = {Measurement of the temperature-dependent output of lead zirconate titanate transducers},
author = {M. Bakaric and P. Fromme and A. Hurrell and S. Rajagopal and P. Miloro and B. Zeqiri and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Bakaric-ULTRASONICS.pdf},
doi = {10.1016/j.ultras.2021.106378},
year = {2021},
date = {2021-02-05},
journal = {Ultrasonics},
volume = {114},
pages = {106378},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. Rajagopal, B. T. Cox Modelling laser ultrasound waveforms: The effect of varying pulse duration and material properties Journal Article Journal of the Acoustical Society of America, 149 (3), pp. 2040-2054, 2021. Abstract | Links | BibTeX @article{2021-Rajagopal-JASA,
title = {Modelling laser ultrasound waveforms: The effect of varying pulse duration and material properties},
author = {S. Rajagopal and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Rajagopal-JASA.pdf},
doi = {10.1121/10.0003558},
year = {2021},
date = {2021-01-29},
journal = {Journal of the Acoustical Society of America},
volume = {149},
number = {3},
pages = {2040-2054},
abstract = {Optical generation of ultrasound using nanosecond duration laser pulses has generated great interest both in industrial and biomedical applications. The availability of portable laser devices using semiconductor technology and optical fibres, as well as numerous source material types based on nanocomposites, has proliferated the applications of laser ultrasound. The nanocomposites can be deposited on the tip of optical fibres as well as planar hard and soft backing materials using various fabrication techniques, making devices suitable for a variety of applications. The ability to choose the acoustic material properties and the laser pulse duration gives considerable control over the ultrasound output. Here, an analytical time-domain solution is derived for the acoustic pressure waveform generated by a planar optical ultrasound source consisting of an optically absorbing layer on a backing. It is shown that by varying the optical attenuation coefficient, the thickness of the absorbing layer, the acoustic proper- ties of the materials, and the laser pulse duration, a wide variety of pulse shapes and trains can be generated. It is shown that a source with a reflecting backing can generate pulses with higher amplitude than a source with an acoustically-matched backing in the same circumstances when stress-confinement has not been satisfied.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Optical generation of ultrasound using nanosecond duration laser pulses has generated great interest both in industrial and biomedical applications. The availability of portable laser devices using semiconductor technology and optical fibres, as well as numerous source material types based on nanocomposites, has proliferated the applications of laser ultrasound. The nanocomposites can be deposited on the tip of optical fibres as well as planar hard and soft backing materials using various fabrication techniques, making devices suitable for a variety of applications. The ability to choose the acoustic material properties and the laser pulse duration gives considerable control over the ultrasound output. Here, an analytical time-domain solution is derived for the acoustic pressure waveform generated by a planar optical ultrasound source consisting of an optically absorbing layer on a backing. It is shown that by varying the optical attenuation coefficient, the thickness of the absorbing layer, the acoustic proper- ties of the materials, and the laser pulse duration, a wide variety of pulse shapes and trains can be generated. It is shown that a source with a reflecting backing can generate pulses with higher amplitude than a source with an acoustically-matched backing in the same circumstances when stress-confinement has not been satisfied. |
E. Martin, M. Roberts, B. E. Treeby Measurement and simulation of steered acoustic fields generated by a multielement array for therapeutic ultrasound Journal Article JASA Express Lett., 2021. Links | BibTeX @article{2021-Martin-JASAEL,
title = {Measurement and simulation of steered acoustic fields generated by a multielement array for therapeutic ultrasound},
author = {E. Martin and M. Roberts and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Martin-JASAEL.pdf},
doi = {10.1121/10.0003210},
year = {2021},
date = {2021-01-11},
journal = {JASA Express Lett.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. Kaupinmäki, B. T. Cox, S. R. Arridge, C. Baker, D. Sinden, B. Zeqiri Pyroelectric ultrasound sensor model: directional response Journal Article Measurement Science and Technology, 32 , pp. 035106, 2021. Links | BibTeX @article{2021-Kaupinmaki-MST,
title = {Pyroelectric ultrasound sensor model: directional response},
author = {S. Kaupinmäki and B. T. Cox and S. R. Arridge and C. Baker and D. Sinden and B. Zeqiri},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Kaupinmaki-MST.pdf},
doi = {10.1088/1361-6501/abc866},
year = {2021},
date = {2021-01-01},
journal = {Measurement Science and Technology},
volume = {32},
pages = {035106},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
A. Stanziola, S. R. Arridge, B. T. Cox, B. E. Treeby A research framework for writing differentiable PDE discretizations in JAX Conference 35th Conference on Neural Information Processing Systems (NeurIPS 2021), 2021. Links | BibTeX @conference{2021-Stanziola-NeurIPS,
title = {A research framework for writing differentiable PDE discretizations in JAX},
author = {A. Stanziola and S. R. Arridge and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Stanziola-NeurIPS.pdf
},
year = {2021},
date = {2021-11-09},
booktitle = {35th Conference on Neural Information Processing Systems (NeurIPS 2021)},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
M. Roberts, E. Martin, M. D. Brown, B. T. Cox, B. E. Treeby Transducer Module Development for an Open-Source Ultrasound Tomography System Conference 2021 IEEE International Ultrasonics Symposium (IUS), 2021. Links | BibTeX @conference{2021-Roberts-IEEEIUS,
title = {Transducer Module Development for an Open-Source Ultrasound Tomography System},
author = {M. Roberts and E. Martin and M. D. Brown and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Roberts-IEEEIUS.pdf
},
doi = {10.1109/IUS52206.2021.9593866},
year = {2021},
date = {2021-09-11},
booktitle = {2021 IEEE International Ultrasonics Symposium (IUS)},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
E. Martin, A. Hurrell, J. Choi, B. E. Treeby Quantifying the effects of standing waves within the skull for ultrasound mediated opening of the blood-brain-barrier Conference 2021 IEEE International Ultrasonics Symposium (IUS), 2021. Links | BibTeX @conference{2021-Martin-IEEEIUS,
title = {Quantifying the effects of standing waves within the skull for ultrasound mediated opening of the blood-brain-barrier},
author = {E. Martin and A. Hurrell and J. Choi and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Martin-IEEEIUS.pdf
},
doi = {10.1109/IUS52206.2021.9593777},
year = {2021},
date = {2021-09-11},
booktitle = {2021 IEEE International Ultrasonics Symposium (IUS)},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
F. Vaverka, B. E. Treeby, J. Jaros Performance Evaluation of Pseudospectral Ultrasound Simulations on a Cluster of Xeon Phi Accelerators Conference High Performance Computing in Science and Engineering. HPCSE 2019. Lecture Notes in Computer Science., 12456 , Springer, Cham, 2021. Links | BibTeX @conference{2021-Vaverka-HPSCE,
title = {Performance Evaluation of Pseudospectral Ultrasound Simulations on a Cluster of Xeon Phi Accelerators},
author = {F. Vaverka and B. E. Treeby and J. Jaros},
editor = {T. Kozubek and P. Arbenz and J. Jaros and L. Riha and J. Sistek and P. Tichy},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Vaverka-HPSCE.pdf},
doi = {10.1007/978-3-030-67077-1_6},
year = {2021},
date = {2021-01-08},
booktitle = {High Performance Computing in Science and Engineering. HPCSE 2019. Lecture Notes in Computer Science.},
volume = {12456},
pages = {99-115},
publisher = {Springer, Cham},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
C. Bench, B. T. Cox Quantitative photoacoustic estimates of intervascular blood oxygenation differences using linear unmixing Conference Anglo-French Physical Acoustics Conference (AFPAC) 2020, 2021. Links | BibTeX @conference{2021-Bench-AFPACb,
title = {Quantitative photoacoustic estimates of intervascular blood oxygenation differences using linear unmixing},
author = {C. Bench and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2021-Bench-AFPAC.pdf
},
doi = {10.1088/1742-6596/1761/1/012001},
year = {2021},
date = {2021-01-01},
booktitle = {Anglo-French Physical Acoustics Conference (AFPAC) 2020},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
Book Chapters
|
A. Thielscher, K. H. Madsen, G. E. Strangman, B. E. Treeby Computational methods for dosimetry Book Chapter Wassermann, E M; Peterchev, A V; Ziemann, U; Lisanby, S H; Siebner, H R; Walsh, V (Ed.): The Oxford Handbook of Transcranial Stimulation, Second Edition, 2021. Links | BibTeX @inbook{2021-Thielscher-OHU,
title = {Computational methods for dosimetry},
author = {A. Thielscher and K. H. Madsen and G. E. Strangman and B. E. Treeby},
editor = {E. M. Wassermann and A. V. Peterchev and U. Ziemann and S. H. Lisanby and H. R. Siebner and V. Walsh},
doi = {10.1093/oxfordhb/9780198832256.013.6},
year = {2021},
date = {2021-02-02},
booktitle = {The Oxford Handbook of Transcranial Stimulation, Second Edition},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
2020
|
Journal Articles
|
B. E. Treeby, E. S. Wise, F. Kuklis, J. Jaros, B. T. Cox Nonlinear ultrasound simulation in an axisymmetric coordinate system using a k-space pseudospectral method Journal Article J. Acoust. Soc. Am., 148 (4), pp. 2288-2300, 2020. Links | BibTeX @article{2020-Treeby-JASA,
title = {Nonlinear ultrasound simulation in an axisymmetric coordinate system using a k-space pseudospectral method},
author = {B. E. Treeby and E. S. Wise and F. Kuklis and J. Jaros and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Treeby-JASA.pdf},
doi = {10.1121/10.0002177},
year = {2020},
date = {2020-10-23},
journal = {J. Acoust. Soc. Am.},
volume = {148},
number = {4},
pages = {2288-2300},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. S. Wise, J. Jaros, B. T. Cox, B. E. Treeby Pseudospectral Time-Domain (PSTD) Methods for the Wave Equation: Realizing Boundary Conditions with Discrete Sine and Cosine Transforms Journal Article Journal of Theoretical and Computational Acoustics, pp. 2050021, 2020. Links | BibTeX @article{2020-Wise-JTCA,
title = {Pseudospectral Time-Domain (PSTD) Methods for the Wave Equation: Realizing Boundary Conditions with Discrete Sine and Cosine Transforms},
author = {E. S. Wise and J. Jaros and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Wise-JTCA-preprint.pdf},
doi = {10.1142/S2591728520500218},
year = {2020},
date = {2020-10-19},
journal = {Journal of Theoretical and Computational Acoustics},
pages = {2050021},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
A. Javaherian, F. Lucka, B. T. Cox Refraction-corrected ray-based inversion for three-dimensional ultrasound tomography of the breast Journal Article Inverse Problems, 36 , pp. 125010, 2020. Links | BibTeX @article{2020-Javaherian-IP,
title = {Refraction-corrected ray-based inversion for three-dimensional ultrasound tomography of the breast},
author = {A. Javaherian and F. Lucka and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Javaherian-IP.pdf},
doi = {10.1088/1361-6420/abc0fc},
year = {2020},
date = {2020-10-14},
journal = {Inverse Problems},
volume = {36},
pages = {125010},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. Rajagopal, B. T. Cox 100 MHz bandwidth planar laser-generated ultrasound source for hydrophone calibration Journal Article Ultrasonics, 108 , pp. 106218, 2020. Links | BibTeX @article{2020-Rajagopal-ULTRASONICS,
title = {100 MHz bandwidth planar laser-generated ultrasound source for hydrophone calibration},
author = {S. Rajagopal and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Rajagopal-ULTRASONICS.pdf},
doi = {10.1016/j.ultras.2020.106218},
year = {2020},
date = {2020-07-12},
journal = {Ultrasonics},
volume = {108},
pages = {106218},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. D. Brown, B. T. Cox, B. E. Treeby Stackable acoustic holograms Journal Article Appl. Phys. Lett., 116 , pp. 261901, 2020. Links | BibTeX @article{2020-Brown-APL,
title = {Stackable acoustic holograms},
author = {M. D. Brown and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Brown-APL.pdf},
doi = {10.1063/5.0009829},
year = {2020},
date = {2020-06-29},
journal = {Appl. Phys. Lett.},
volume = {116},
pages = {261901},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
P. Patel, M. Roberts, B. T. Cox Ultrasound Tomography (UST): a potential new breast screening modality? Journal Article Acoustics Bulletin, 45 (2), pp. 51-55, 2020. Links | BibTeX @article{2020-Patel-IOA,
title = {Ultrasound Tomography (UST): a potential new breast screening modality?},
author = {P. Patel and M. Roberts and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Patel-IOA.pdf},
year = {2020},
date = {2020-04-01},
issuetitle = {Ultrasound Tomography (UST): a potential new breast screening modality?},
journal = {Acoustics Bulletin},
volume = {45},
number = {2},
pages = {51-55},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. Bakaric, P. Miloro, B. Zeqiri, B. T. Cox, B. E. Treeby The effect of curing temperature and time on the acoustic and optical properties of PVCP Journal Article IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 67 (3), pp. 505-512, 2020. Links | BibTeX @article{2020-Bakaric-IEEETUFFC,
title = {The effect of curing temperature and time on the acoustic and optical properties of PVCP},
author = {M. Bakaric and P. Miloro and B. Zeqiri and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Bakaric-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2019.2947341},
year = {2020},
date = {2020-03-01},
journal = {IEEE Trans. Ultrason. Ferroelectr. Freq. Control},
volume = {67},
number = {3},
pages = {505-512},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
D. R. Ramasawmy, B. T. Cox, B. E. Treeby ElasticMatrix: A MATLAB toolbox for anisotropic elastic wave propagation in layered media Journal Article SoftwareX, 11 , pp. 100397, 2020. Links | BibTeX @article{2020-Ramasawmy-SOFTWAREX,
title = {ElasticMatrix: A MATLAB toolbox for anisotropic elastic wave propagation in layered media},
author = {D. R. Ramasawmy and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Ramasawmy-SOFTWAREX.pdf},
doi = {10.1016/j.softx.2020.100397},
year = {2020},
date = {2020-01-03},
journal = {SoftwareX},
volume = {11},
pages = {100397},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. Martin, J. Jaros, B. E. Treeby Experimental validation of k-Wave: Nonlinear wave propagation in layered, absorbing fluid media Journal Article IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 67 (1), pp. 81-91, 2020. Links | BibTeX @article{2020-Martin-IEEETUFFC,
title = {Experimental validation of k-Wave: Nonlinear wave propagation in layered, absorbing fluid media},
author = {E. Martin and J. Jaros and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Martin-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2019.2941795},
year = {2020},
date = {2020-01-01},
journal = {IEEE Trans. Ultrason. Ferroelectr. Freq. Control},
volume = {67},
number = {1},
pages = {81-91},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
M. Jaros, B. E. Treeby, P. S. Georgiou, J. Jaros k-Dispatch: A workflow management system for the automated execution of biomedical ultrasound simulations on remote computing resources Conference PASC '20: Proceedings of the Platform for Advanced Scientific Computing Conference, ACM, New York, NY, USA, 2020. Links | BibTeX @conference{2020-Jaros-PASC,
title = {k-Dispatch: A workflow management system for the automated execution of biomedical ultrasound simulations on remote computing resources},
author = {M. Jaros and B. E. Treeby and P. S. Georgiou and J. Jaros},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Jaros-PASC.pdf},
doi = {10.1145/3394277.3401854},
year = {2020},
date = {2020-07-01},
booktitle = {PASC '20: Proceedings of the Platform for Advanced Scientific Computing Conference},
publisher = {ACM},
address = {New York, NY, USA},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
M. Bakaric, B. Zeqiri, B. T. Cox, B. E. Treeby Test materials for characterising heating from HIFU devices using photoacoustic thermometry Conference Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing 2020, 11240 , 2020. Links | BibTeX @conference{2020-Bakaric-SPIE,
title = {Test materials for characterising heating from HIFU devices using photoacoustic thermometry},
author = {M. Bakaric and B. Zeqiri and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2020-Bakaric-SPIE.pdf},
doi = {10.1117/12.2542429},
year = {2020},
date = {2020-02-28},
booktitle = {Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing 2020},
volume = {11240},
pages = {112401D},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2019
|
Journal Articles
|
M. D. Brown Phase and amplitude modulation with acoustic holograms Journal Article Appl. Phys. Lett., 115 , pp. 053701, 2019. Links | BibTeX @article{2019-Brown-APL,
title = {Phase and amplitude modulation with acoustic holograms},
author = {M. D. Brown},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Brown-APL.pdf},
doi = {10.1063/1.5110673},
year = {2019},
date = {2019-07-29},
journal = {Appl. Phys. Lett.},
volume = {115},
pages = {053701},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. S. Wise, B. T. Cox, J. Jaros, B. E. Treeby Representing arbitrary acoustic source and sensor distributions in Fourier collocation methods Journal Article J. Acoust. Soc. Am., 146 (1), pp. 278-288, 2019. Links | BibTeX @article{2019-Wise-JASA,
title = {Representing arbitrary acoustic source and sensor distributions in Fourier collocation methods},
author = {E. S. Wise and B. T. Cox and J. Jaros and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Wise-JASA.pdf},
doi = {10.1121/1.5116132},
year = {2019},
date = {2019-07-19},
journal = {J. Acoust. Soc. Am.},
volume = {146},
number = {1},
pages = {278-288},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. D. Brown, E. Z. Zhang, B. E. Treeby, P. C. Beard, B. T. Cox Reverberant cavity photoacoustic imaging Journal Article Optica, 6 (6), pp. 821-822, 2019. Links | BibTeX @article{2019-Brown-OPTICA,
title = {Reverberant cavity photoacoustic imaging},
author = {M. D. Brown and E. Z. Zhang and B. E. Treeby and P. C. Beard and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Brown-OPTICA.pdf},
doi = {10.1364/OPTICA.6.000821},
year = {2019},
date = {2019-06-19},
journal = {Optica},
volume = {6},
number = {6},
pages = {821-822},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, J. Jaros, E. Martin, B. T. Cox From biology to bytes: Predicting the path of ultrasound waves through the human body Journal Article Acoustics Today, 15 (2), pp. 36-44, 2019. Links | BibTeX @article{2019-Treeby-AT,
title = {From biology to bytes: Predicting the path of ultrasound waves through the human body},
author = {B. E. Treeby and J. Jaros and E. Martin and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Treeby-AT.pdf},
doi = {10.1121/AT.2019.15.2.36},
year = {2019},
date = {2019-06-14},
journal = {Acoustics Today},
volume = {15},
number = {2},
pages = {36-44},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
D. R. Ramasawmy, E. Martin, J. A. Guggenheim, E. Z. Zhang, P. C. Beard, B. E. Treeby, B. T. Cox Analysis of the Directivity of Glass-Etalon Fabry-Perot Ultrasound Sensors Journal Article IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 66 (9), pp. 1504-1513, 2019. Links | BibTeX @article{2019-Ramasawmy-IEEETUFFC,
title = {Analysis of the Directivity of Glass-Etalon Fabry-Perot Ultrasound Sensors},
author = {D. R. Ramasawmy and E. Martin and J. A. Guggenheim and E. Z. Zhang and P. C. Beard and B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Ramasawmy-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2019.2921735},
year = {2019},
date = {2019-06-07},
journal = {IEEE Trans. Ultrason. Ferroelectr. Freq. Control},
volume = {66},
number = {9},
pages = {1504-1513},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. Martin, B. E. Treeby Investigation of the repeatability and reproducibility of hydrophone measurements of medical ultrasound fields Journal Article J. Acoust. Soc. Am., 145 (3), pp. 1270-1282, 2019. Links | BibTeX @article{2019-Martin-JASA,
title = {Investigation of the repeatability and reproducibility of hydrophone measurements of medical ultrasound fields},
author = {E. Martin and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Martin-JASA.pdf},
doi = {10.1121/1.5093306},
year = {2019},
date = {2019-03-07},
journal = {J. Acoust. Soc. Am.},
volume = {145},
number = {3},
pages = {1270-1282},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
M. Roberts, E. Martin, B. T. Cox, B. E. Treeby Progress towards an open-source, low-cost ultrasound computed tomography research system Conference The 2nd International Workshop on Medical Ultrasound Tomography (MUST 2019), KIT Press, 2019. Links | BibTeX @conference{2019-Roberts-MUST,
title = {Progress towards an open-source, low-cost ultrasound computed tomography research system},
author = {M. Roberts and E. Martin and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Roberts-MUST.pdf},
year = {2019},
date = {2019-10-14},
booktitle = {The 2nd International Workshop on Medical Ultrasound Tomography (MUST 2019)},
pages = {63-76},
publisher = {KIT Press},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
L. Albelda Gimeno, E. Martin, O. Wright, B. E. Treeby Experimental assessment of skull aberration and transmission loss at 270 kHz for focused ultrasound stimulation of the primary visual cortex Conference IEEE International Ultrasonics Symposium, 2019. Links | BibTeX @conference{2019-Albelda-Gimeno-IEEEIUS,
title = {Experimental assessment of skull aberration and transmission loss at 270 kHz for focused ultrasound stimulation of the primary visual cortex},
author = {L. Albelda Gimeno and E. Martin and O. Wright and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Albelda-Gimeno-IEEEIUS.pdf},
year = {2019},
date = {2019-10-07},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
M. Bakaric, A. Ivory, B. Zeqiri, B. T. Cox, B. E. Treeby Measurement of the temperature-dependent speed of sound and change in Gruneisen parameter of tissue-mimicking materials Conference IEEE International Ultrasonics Symposium, 2019. Links | BibTeX @conference{2019-Bakaric-IEEEIUS,
title = {Measurement of the temperature-dependent speed of sound and change in Gruneisen parameter of tissue-mimicking materials},
author = {M. Bakaric and A. Ivory and B. Zeqiri and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Bakaric-IEEEIUS.pdf},
year = {2019},
date = {2019-10-07},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
D. R. Ramasawmy, B. T. Cox, B. E. Treeby The influence of strain-optic coefficients on the transduction mechanism of planar glass etalon Fabry-Perot ultrasound sensors Conference IEEE International Ultrasonics Symposium, 2019. Links | BibTeX @conference{2019-Ramasawmy-IEEEIUS,
title = {The influence of strain-optic coefficients on the transduction mechanism of planar glass etalon Fabry-Perot ultrasound sensors},
author = {D. R. Ramasawmy and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Ramasawmy-IEEEIUS.pdf},
year = {2019},
date = {2019-10-07},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
F. Vaverka, B. E. Treeby, J. Jaros Evaluation of the suitability of Intel Xeon Phi clusters for the simulation of ultrasound wave propagation using pseudospectral methods Conference International Conference on Computational Science (ICCS 2019), LNCS, , 11538 , 2019. Links | BibTeX @conference{2019-Vaverka-ICCS,
title = {Evaluation of the suitability of Intel Xeon Phi clusters for the simulation of ultrasound wave propagation using pseudospectral methods},
author = {F. Vaverka and B. E. Treeby and J. Jaros},
editor = {J. Rodrigues},
url = {http://bug.medphys.ucl.ac.uk/papers/2019-Vaverka-ICCS.pdf},
doi = {10.1007/978-3-030-22744-9_45},
year = {2019},
date = {2019-06-08},
booktitle = {International Conference on Computational Science (ICCS 2019), LNCS, },
volume = {11538},
pages = {577-590},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2018
|
Journal Articles
|
V. Suomi, J. Jaros, B. E. Treeby, R. Cleveland Full modeling of high-intensity focused ultrasound and thermal heating in the kidney using realistic patient models Journal Article IEEE Trans. Biomed. Eng., 65 (11), pp. 2660-2670, 2018. Links | BibTeX @article{2018-Suomi-IEEETBE,
title = {Full modeling of high-intensity focused ultrasound and thermal heating in the kidney using realistic patient models},
author = {V. Suomi and J. Jaros and B. E. Treeby and R. Cleveland},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Suomi-IEEETBE.pdf},
doi = {10.1109/TBME.2018.2870064},
year = {2018},
date = {2018-11-01},
journal = {IEEE Trans. Biomed. Eng.},
volume = {65},
number = {11},
pages = {2660-2670},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
V. Suomi, B. E. Treeby, J. Jaros, P. Makela, M. Anttinen, J. Saunavaara, T. Sainio, A. Kiviniemi, R. Blanco Transurethral ultrasound therapy of the prostate in the presence of calcifications: A simulation study Journal Article Med. Phys., 45 (11), pp. 4793-4805, 2018. Links | BibTeX @article{2018-Suomi-MP,
title = {Transurethral ultrasound therapy of the prostate in the presence of calcifications: A simulation study},
author = {V. Suomi and B. E. Treeby and J. Jaros and P. Makela and M. Anttinen and J. Saunavaara and T. Sainio and A. Kiviniemi and R. Blanco},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Suomi-MP.pdf},
doi = {10.1002/mp.13183},
year = {2018},
date = {2018-11-01},
journal = {Med. Phys.},
volume = {45},
number = {11},
pages = {4793-4805},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. S. Wise, B. T. Cox, B. E. Treeby Bandwidth-based mesh adaptation in multiple dimensions Journal Article J. Comp. Phys., 371 , pp. 651-662, 2018. Links | BibTeX @article{Wise2018,
title = {Bandwidth-based mesh adaptation in multiple dimensions},
author = {E. S. Wise and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Wise-JCP.pdf},
doi = {10.1016/j.jcp.2018.06.009},
year = {2018},
date = {2018-10-15},
journal = {J. Comp. Phys.},
volume = {371},
pages = {651-662},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, F. Lucka, E. Martin, B. T. Cox Equivalent-source acoustic holography for projecting measured ultrasound fields through complex media Journal Article IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 65 (10), pp. 1857-1864, 2018. Links | BibTeX @article{2018-Treeby-IEEETUFFC,
title = {Equivalent-source acoustic holography for projecting measured ultrasound fields through complex media},
author = {B. E. Treeby and F. Lucka and E. Martin and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Treeby-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2018.2861895},
year = {2018},
date = {2018-10-01},
journal = {IEEE Trans. Ultrason. Ferroelectr. Freq. Control},
volume = {65},
number = {10},
pages = {1857-1864},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, E. S. Wise, B. T. Cox Nonstandard Fourier Pseudospectral Time Domain (PSTD) Schemes for Partial Differential Equations Journal Article Commun. Comput. Phys., 24 (3), pp. 623-634, 2018. Links | BibTeX @article{2018-Treeby-CCP,
title = {Nonstandard Fourier Pseudospectral Time Domain (PSTD) Schemes for Partial Differential Equations},
author = {B. E. Treeby and E. S. Wise and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Treeby-CCP.pdf},
doi = {10.4208/cicp.OA-2017-0192},
year = {2018},
date = {2018-09-01},
journal = {Commun. Comput. Phys.},
volume = {24},
number = {3},
pages = {623-634},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. Rajagopal, T. Sainsbury, B. E. Treeby, B. T. Cox Laser generated ultrasound sources using carbon-polymer nanocomposites for high frequency metrology Journal Article J. Acoust. Soc. Am., 144 (2), pp. 584-597, 2018. Links | BibTeX @article{Rajagopal2018,
title = {Laser generated ultrasound sources using carbon-polymer nanocomposites for high frequency metrology},
author = {S. Rajagopal and T. Sainsbury and B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Rajagopal-JASA.pdf},
doi = {10.1121/1.5048413},
year = {2018},
date = {2018-08-03},
journal = {J. Acoust. Soc. Am.},
volume = {144},
number = {2},
pages = {584-597},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
J. L. Robertson, J. Urban, J. Stitzel, B. E. Treeby The effects of image homogenisation on simulated transcranial ultrasound propagation Journal Article Phys. Med. Biol., 63 , pp. 145014, 2018. Links | BibTeX @article{Robertson2018,
title = {The effects of image homogenisation on simulated transcranial ultrasound propagation},
author = {J. L. Robertson and J. Urban and J. Stitzel and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Robertson-PMB.pdf},
doi = {10.1088/1361-6560/aacc33},
year = {2018},
date = {2018-07-16},
journal = {Phys. Med. Biol.},
volume = {63},
pages = {145014},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. Bakaric, E. Martin, P. S. Georgiou, B. T. Cox, H. Payne, B. E. Treeby Experimental study of beam distortion due to fiducial markers during salvage HIFU in the prostate Journal Article Journal of Therapeutic Ultrasound, 6 (1), pp. 1-12, 2018. Links | BibTeX @article{Bakaric2018,
title = {Experimental study of beam distortion due to fiducial markers during salvage HIFU in the prostate},
author = {M. Bakaric and E. Martin and P. S. Georgiou and B. T. Cox and H. Payne and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Bakaric-JTU.pdf},
doi = {10.1186/s40349-018-0109-3},
year = {2018},
date = {2018-03-22},
journal = {Journal of Therapeutic Ultrasound},
volume = {6},
number = {1},
pages = {1-12},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, J. Budisky, E. S. Wise, J. Jaros, B. T. Cox Rapid calculation of acoustic fields from arbitrary continuous-wave sources Journal Article J. Acoust. Soc. Am., 143 (1), pp. 529-537, 2018. Links | BibTeX @article{2018-Treeby-JASA,
title = {Rapid calculation of acoustic fields from arbitrary continuous-wave sources},
author = {B. E. Treeby and J. Budisky and E. S. Wise and J. Jaros and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Treeby-JASA.pdf},
doi = {10.1121/1.5021245},
year = {2018},
date = {2018-01-30},
journal = {J. Acoust. Soc. Am.},
volume = {143},
number = {1},
pages = {529-537},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
B. T. Cox, B. E. Treeby Accurate time-varying sources in k-space pseudospectral time domain acoustic simulations Conference IEEE International Ultrasonics Symposium, 2018. Links | BibTeX @conference{2018-Cox-IEEEIUS,
title = {Accurate time-varying sources in k-space pseudospectral time domain acoustic simulations},
author = {B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Cox-IEEEIUS.pdf},
year = {2018},
date = {2018-10-22},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
B. E. Treeby, F. Vaverka, J. Jaros Performance and accuracy analysis of nonlinear k-Wave simulations using local domain decomposition with an 8-GPU server Conference Proc. Mtgs. Acoust., 34 , 2018. Links | BibTeX @conference{2018-Treeby-ISNA,
title = {Performance and accuracy analysis of nonlinear k-Wave simulations using local domain decomposition with an 8-GPU server},
author = {B. E. Treeby and F. Vaverka and J. Jaros},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Treeby-ISNA.pdf},
doi = {10.1121/2.0000883},
year = {2018},
date = {2018-10-22},
booktitle = {Proc. Mtgs. Acoust.},
volume = {34},
pages = {022002},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
V. Suomi, B. E. Treeby, J. Jaros, J. Saunavaara, A. Kiviniemi, R. Blanco The effect of tissue physiological variability on transurethral ultrasound therapy of the prostate Conference 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2018. Links | BibTeX @conference{2018-Suomi-EMBC,
title = {The effect of tissue physiological variability on transurethral ultrasound therapy of the prostate},
author = {V. Suomi and B. E. Treeby and J. Jaros and J. Saunavaara and A. Kiviniemi and R. Blanco},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Suomi-EMBC.pdf},
doi = {10.1109/EMBC.2018.8513548},
year = {2018},
date = {2018-07-18},
booktitle = {40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)},
pages = {5701-5704},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
K. Kadlubiak, J. Jaros, B. E. Treeby GPU-Accelerated Simulation of Elastic Wave Propagation Conference 2018 International Conference on High Performance Computing & Simulation (HPCS), IEEE, 2018. Links | BibTeX @conference{2018-Kadlubiak-HPCS,
title = {GPU-Accelerated Simulation of Elastic Wave Propagation},
author = {K. Kadlubiak and J. Jaros and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Kadlubiak-HPCS},
doi = {10.1109/HPCS.2018.00044},
year = {2018},
date = {2018-07-16},
booktitle = {2018 International Conference on High Performance Computing & Simulation (HPCS)},
pages = {188-195},
publisher = {IEEE},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
M. Cudova, B. E. Treeby, J. Jaros Design of HIFU treatment plans using an evolutionary strategy Conference Proceedings of the Genetic and Evolutionary Computation Conference (GECCO) Companion, 2018. Links | BibTeX @conference{Cudova2018,
title = {Design of HIFU treatment plans using an evolutionary strategy},
author = {M. Cudova and B. E. Treeby and J. Jaros},
url = {http://bug.medphys.ucl.ac.uk/papers/2018-Cudova-GECCO.pdf},
doi = {10.1145/3205651.3208268},
year = {2018},
date = {2018-07-15},
booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference (GECCO) Companion},
pages = {1568-1575},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2017
|
Journal Articles
|
M. D. Brown, B. T. Cox, B. E. Treeby Design of multi-frequency acoustic kinoforms Journal Article Appl. Phys. Lett., 111 (24), pp. 244101, 2017. Links | BibTeX @article{Brown2017b,
title = {Design of multi-frequency acoustic kinoforms},
author = {M. D. Brown and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Brown-APL-2.pdf},
doi = {10.1063/1.5004040},
year = {2017},
date = {2017-12-11},
journal = { Appl. Phys. Lett.},
volume = {111},
number = {24},
pages = {244101},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. Martin, E. Z. Zhang, J. A. Guggenheim, P. C. Beard, B. E. Treeby Rapid spatial mapping of focused ultrasound fields using a planar Fabry-Perot sensor Journal Article IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 64 (11), pp. 1711-1722, 2017. Links | BibTeX @article{Martin2017,
title = {Rapid spatial mapping of focused ultrasound fields using a planar Fabry-Perot sensor},
author = {E. Martin and E. Z. Zhang and J. A. Guggenheim and P. C. Beard and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Martin-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2017.2748886},
year = {2017},
date = {2017-11-01},
journal = {IEEE Trans. Ultrason. Ferroelectr. Freq. Control},
volume = {64},
number = {11},
pages = {1711-1722},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. S. Wise, B. T. Cox, B. E. Treeby Mesh density functions based on local bandwidth applied to moving mesh methods Journal Article Commun. Comput. Phys., 22 (5), pp. 1286-1308, 2017. Links | BibTeX @article{Wise2017,
title = {Mesh density functions based on local bandwidth applied to moving mesh methods},
author = {E. S. Wise and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Wise-CCP.pdf},
doi = {10.4208/cicp.OA-2016-0246},
year = {2017},
date = {2017-08-21},
journal = {Commun. Comput. Phys.},
volume = {22},
number = {5},
pages = {1286-1308},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
J. L. Robertson, B. T. Cox, J. Jaros, B. E. Treeby Accurate simulation of transcranial ultrasound propagation for ultrasonic neuromodulation and stimulation Journal Article J. Acoust. Soc. Am., 141 (3), pp. 1726-1738, 2017. Links | BibTeX @article{Robertson2017b,
title = {Accurate simulation of transcranial ultrasound propagation for ultrasonic neuromodulation and stimulation},
author = {J. L. Robertson and B. T. Cox and J. Jaros and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Robertson-JASA.pdf},
doi = {10.1121/1.4976339},
year = {2017},
date = {2017-03-13},
journal = {J. Acoust. Soc. Am.},
volume = {141},
number = {3},
pages = {1726-1738},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. Perez Liva, J. L. Herraiz, J. M. Udias, E. Miller, B. T. Cox, B. E. Treeby Time domain reconstruction of sound speed and attenuation in ultrasound computed tomography using full wave inversion Journal Article J. Acoust. Soc. Am., 141 (3), pp. 1595-1604, 2017. Links | BibTeX @article{Perez-Liva2017,
title = {Time domain reconstruction of sound speed and attenuation in ultrasound computed tomography using full wave inversion},
author = {M. {Perez Liva} and J. L. Herraiz and J. M. Udias and E. Miller and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Perez-Liva-JASA.pdf},
doi = {10.1121/1.4976688},
year = {2017},
date = {2017-03-08},
journal = {J. Acoust. Soc. Am.},
volume = {141},
number = {3},
pages = {1595-1604},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
J. L. Robertson, E. Martin, B. T. Cox, B. E. Treeby Sensitivity of simulated transcranial ultrasound fields to acoustic medium property maps Journal Article Phys. Med. Biol., 62 (7), pp. 2559-2580, 2017. Links | BibTeX @article{Robertson2017,
title = {Sensitivity of simulated transcranial ultrasound fields to acoustic medium property maps},
author = {J. L. Robertson and E. Martin and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Robertson-PMB.pdf},
doi = {10.1088/1361-6560/aa5e98},
year = {2017},
date = {2017-03-01},
journal = {Phys. Med. Biol.},
volume = {62},
number = {7},
pages = {2559-2580},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. D. Brown, D. I. Nikitichev, B. E. Treeby, B. T. Cox Generating arbitrary ultrasound fields with tailored optoacoustic surface profiles Journal Article Appl. Phys. Lett., 110 (9), pp. 094102, 2017. Links | BibTeX @article{Brown2017,
title = {Generating arbitrary ultrasound fields with tailored optoacoustic surface profiles},
author = {M. D. Brown and D. I. Nikitichev and B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Brown-APL.pdf},
doi = {10.1063/1.4976942},
year = {2017},
date = {2017-02-28},
journal = {Appl. Phys. Lett.},
volume = {110},
number = {9},
pages = {094102},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
P. S. Georgiou, J. Jaros, H. Payne, C. Allen, T. T. Shah, H. U. Ahmed, E. Gibson, D. Barratt, B. E. Treeby Beam distortion due to gold fiducial markers during salvage high-intensity focused ultrasound in the prostate Journal Article Med. Phys., 44 (2), pp. 679–693, 2017. Links | BibTeX @article{Georgiou2017,
title = {Beam distortion due to gold fiducial markers during salvage high-intensity focused ultrasound in the prostate},
author = {P. S. Georgiou and J. Jaros and H. Payne and C. Allen and T. T. Shah and H. U. Ahmed and E. Gibson and D. Barratt and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Georgiou-MP.pdf},
doi = {10.1002/mp.12044},
year = {2017},
date = {2017-02-01},
journal = {Med. Phys.},
volume = {44},
number = {2},
pages = {679–693},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
M. D. Brown, B. T. Cox, B. E. Treeby Investigating the effect of thickness and frequency spacing on multi-frequency acoustic kinoforms Conference IEEE International Ultrasonics Symposium, 2017. Links | BibTeX @conference{Brown2017b,
title = {Investigating the effect of thickness and frequency spacing on multi-frequency acoustic kinoforms},
author = {M. D. Brown and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Brown-IEEEIUS.pdf},
year = {2017},
date = {2017-09-07},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
S. Rajagopal, T. Sainsbury, B. E. Treeby, B. T. Cox Laser generated ultrasound sources using polymer nanocomposites for high frequency metrology Conference IEEE International Ultrasonics Symposium, 2017. Links | BibTeX @conference{Rajagopal2017,
title = {Laser generated ultrasound sources using polymer nanocomposites for high frequency metrology},
author = {S. Rajagopal and T. Sainsbury and B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Rajagopal-IEEEIUS.pdf},
year = {2017},
date = {2017-09-07},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
E. S. Wise, J. L. Robertson, B. T. Cox, B. E. Treeby Staircase-free acoustic sources for grid-based models of wave propagation Conference IEEE International Ultrasonics Symposium, 2017. Links | BibTeX @conference{Wise2017b,
title = {Staircase-free acoustic sources for grid-based models of wave propagation},
author = {E. S. Wise and J. L. Robertson and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Wise-IEEEIUS.pdf},
year = {2017},
date = {2017-09-07},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
D. R. Ramasawmy, E. Martin, J. A. Guggenheim, B. T. Cox, B. E. Treeby Directivity of a planar hard-dielectric Fabry-Perot optical ultrasound sensor Conference IEEE International Ultrasonics Symposium, 2017. Links | BibTeX @conference{Ramasawmy2017,
title = {Directivity of a planar hard-dielectric Fabry-Perot optical ultrasound sensor},
author = {D. R. Ramasawmy and E. Martin and J. A. Guggenheim and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2017-Ramasawmy-IEEEIUS.pdf},
year = {2017},
date = {2017-09-07},
booktitle = { IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2016
|
Journal Articles
|
J. Jaros, F. Vaverka, B. E. Treeby Spectral domain decomposition using local Fourier basis: Application to ultrasound simulation on a cluster of GPUs Journal Article Supercomputing Frontiers and Innovations, 3 (3), pp. 39–54, 2016. Links | BibTeX @article{Jaros2016b,
title = {Spectral domain decomposition using local Fourier basis: Application to ultrasound simulation on a cluster of GPUs},
author = {J. Jaros and F. Vaverka and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2016-Jaros-JSF.pdf},
doi = {10.14529/jsfi160305},
year = {2016},
date = {2016-11-01},
journal = {Supercomputing Frontiers and Innovations},
volume = {3},
number = {3},
pages = {39--54},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
S. R. Arridge, M. M. Betcke, B. T. Cox, F. Lucka, B. E. Treeby On the adjoint operator in photoacoustic tomography Journal Article Inv. Problems, 32 (11), pp. 115012, 2016. Links | BibTeX @article{Arridge2016,
title = {On the adjoint operator in photoacoustic tomography},
author = {S. R. Arridge and M. M. Betcke and B. T. Cox and F. Lucka and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2016-Arridge-INVPROB.pdf},
doi = {10.1088/0266-5611/32/11/115012},
year = {2016},
date = {2016-10-03},
journal = {Inv. Problems},
volume = {32},
number = {11},
pages = {115012},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
E. Martin, Y. T. Ling, B. E. Treeby Simulating focused ultrasound transducers using discrete sources on regular cartesian grids Journal Article IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 63 (10), pp. 1535–1542, 2016. Links | BibTeX @article{Martin2016,
title = {Simulating focused ultrasound transducers using discrete sources on regular cartesian grids},
author = {E. Martin and Y. T. Ling and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2016-Martin-IEEETUFFC.pdf},
doi = { 10.1109/TUFFC.2016.2600862},
year = {2016},
date = {2016-08-16},
journal = {IEEE Trans. Ultrason. Ferroelectr. Freq. Control},
volume = {63},
number = {10},
pages = {1535--1542},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
J. Jaros, A. P. Rendell, B. E. Treeby Full-wave nonlinear ultrasound simulation on distributed clusters with applications in high-intensity focused ultrasound Journal Article Int. J. High Perform. Comput., 30 (2), pp. 137–155, 2016. Links | BibTeX @article{Jaros2016,
title = {Full-wave nonlinear ultrasound simulation on distributed clusters with applications in high-intensity focused ultrasound},
author = {J. Jaros and A. P. Rendell and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2016-Jaros-IJHPCA.pdf},
doi = {10.1177/1094342015581024},
year = {2016},
date = {2016-04-18},
journal = {Int. J. High Perform. Comput.},
volume = {30},
number = {2},
pages = {137--155},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
M. D. Brown, J. Jaros, B. T. Cox, B. E. Treeby Control of broadband optically generated ultrasound pulses using binary amplitude holograms Journal Article J. Acoust. Soc. Am., 139 (4), pp. 1637–1467, 2016. Links | BibTeX @article{Brown2016,
title = {Control of broadband optically generated ultrasound pulses using binary amplitude holograms},
author = {M. D. Brown and J. Jaros and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2016-Brown-JASA.pdf},
doi = {10.1121/1.4944758},
year = {2016},
date = {2016-04-06},
journal = {J. Acoust. Soc. Am.},
volume = {139},
number = {4},
pages = {1637--1467},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
M. D. Brown, E. Martin, B. T. Cox, B. E. Treeby Single pulse illumination of multi-layer photoacoustic holograms for patterned ultrasound field generation Conference IEEE International Ultrasonics Symposium, 2016. Links | BibTeX @conference{Brown2016b,
title = {Single pulse illumination of multi-layer photoacoustic holograms for patterned ultrasound field generation},
author = {M. D. Brown and E. Martin and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2016-Brown-IEEEIUS.pdf},
year = {2016},
date = {2016-09-19},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
V. Suomi, J. Jaros, B. E. Treeby, R. Cleveland Nonlinear 3-D simulation of high-intensity focused ultrasound therapy in the kidney Conference IEEE 38th Annual International Conference of the Engineering in Medicine and Biology Society (EMBC), 2016. Links | BibTeX @conference{Suomi2016,
title = {Nonlinear 3-D simulation of high-intensity focused ultrasound therapy in the kidney},
author = {V. Suomi and J. Jaros and B. E. Treeby and R. Cleveland},
url = {http://bug.medphys.ucl.ac.uk/papers/2016-Suomi-IEEEEMBC.pdf},
doi = { 10.1109/EMBC.2016.7592008},
year = {2016},
date = {2016-08-16},
booktitle = {IEEE 38th Annual International Conference of the Engineering in Medicine and Biology Society (EMBC)},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
M. Perez Liva, J. L. Herraiz, J. M Udias, B. T. Cox, B. E. Treeby Full-wave attenuation reconstruction in the time domain for ultrasound computed tomography Conference IEEE 13th International Symposium on Biomedical Imaging (ISBI), 2016. Links | BibTeX @conference{PerezLiva2016,
title = {Full-wave attenuation reconstruction in the time domain for ultrasound computed tomography},
author = {M. {Perez Liva} and J. L. Herraiz and J. M Udias and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2016-PerezLiva-ISBI.pdf},
doi = {10.1109/ISBI.2016.7493365},
year = {2016},
date = {2016-04-13},
booktitle = {IEEE 13th International Symposium on Biomedical Imaging (ISBI)},
pages = {710 - 713},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
B. E. Treeby, J. Jaros, B. T. Cox Advanced photoacoustic image reconstruction using the k-Wave toolbox Conference Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 9708 , 2016. Links | BibTeX @conference{Treeby2016,
title = {Advanced photoacoustic image reconstruction using the k-Wave toolbox},
author = {B. E. Treeby and J. Jaros and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2016-Treeby-SPIE.pdf},
doi = {10.1117/12.2209254},
year = {2016},
date = {2016-03-18},
booktitle = {Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing},
volume = {9708},
pages = {97082P},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2015
|
Journal Articles
|
A. P. Jathoul, J. Laufer, O. Ogunlade, B. E. Treeby, B. T. Cox, E. Z. Zhang, P. Johnson, A. R. Pizzey, B. Philip, T. Marafioti, M. F. Lythgoe, R. B. Pedley, M. A. Pule, P. C. Beard Deep in vivo photoacoustic imaging of mammalian tissues using a tyrosinase-based genetic reporter Journal Article Nature Photonics, 9 , pp. 239–-246, 2015. Links | BibTeX @article{Jathoul2015,
title = {Deep in vivo photoacoustic imaging of mammalian tissues using a tyrosinase-based genetic reporter},
author = {A. P. Jathoul and J. Laufer and O. Ogunlade and B. E. Treeby and B. T. Cox and E. Z. Zhang and P. Johnson and A. R. Pizzey and B. Philip and T. Marafioti and M. F. Lythgoe and R. B. Pedley and M. A. Pule and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2015-Jathoul-NATPH.pdf},
doi = {10.1038/nphoton.2015.22},
year = {2015},
date = {2015-03-02},
journal = {Nature Photonics},
volume = {9},
pages = {239–-246},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
Y. T. Ling, E. Martin, B. E. Treeby Discrete source model for simulating bowl-shaped focused ultrasound transducers on regular grids: Design and experimental validation Conference IEEE International Ultrasonics Symposium, 2015. Links | BibTeX @conference{Ling2015,
title = {Discrete source model for simulating bowl-shaped focused ultrasound transducers on regular grids: Design and experimental validation},
author = {Y. T. Ling and E. Martin and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2015-Ling-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2015.0281},
year = {2015},
date = {2015-10-21},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
E. Martin, E. Z. Zhang, P. C. Beard, B. E. Treeby Rapid spatial mapping of the acoustic pressure in high intensity focused ultrasound fields at clinical intensities using a novel planar Fabry-Perot interferometer Conference IEEE International Ultrasonics Symposium, 2015. Links | BibTeX @conference{Martin2015,
title = {Rapid spatial mapping of the acoustic pressure in high intensity focused ultrasound fields at clinical intensities using a novel planar Fabry-Perot interferometer},
author = {E. Martin and E. Z. Zhang and P. C. Beard and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2015-Martin-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2015.0229},
year = {2015},
date = {2015-10-21},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
B. E. Treeby, T. Saratoon The contribution of shear wave absorption to ultrasound heating in bones: Coupled elastic and thermal modeling Conference IEEE International Ultrasonics Symposium, 2015. Links | BibTeX @conference{Treeby2015,
title = {The contribution of shear wave absorption to ultrasound heating in bones: Coupled elastic and thermal modeling},
author = {B. E. Treeby and T. Saratoon},
url = {http://bug.medphys.ucl.ac.uk/papers/2015-Treeby-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2015.0296},
year = {2015},
date = {2015-10-21},
booktitle = {IEEE International Ultrasonics Symposium},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
E. S. Wise, B. T. Cox, B. E. Treeby A monitor function for spectral moving mesh methods applied to nonlinear acoustics Conference International Symposium on Nonlinear Acoustics (AIP Conference Proceedings), 1685 , 2015. Links | BibTeX @conference{Wise2015,
title = {A monitor function for spectral moving mesh methods applied to nonlinear acoustics},
author = {E. S. Wise and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2015-Wise-ISNA.pdf},
doi = {10.1063/1.4934446},
year = {2015},
date = {2015-06-29},
booktitle = {International Symposium on Nonlinear Acoustics (AIP Conference Proceedings)},
volume = {1685},
pages = {070009 },
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
E. Martin, B. E. Treeby Experimental validation of computational models for large-scale nonlinear ultrasound simulations in heterogeneous, absorbing fluid media Conference International Symposium on Nonlinear Acoustics (AIP Conference Proceedings), 1685 , 2015. Links | BibTeX @conference{Martin2015a,
title = {Experimental validation of computational models for large-scale nonlinear ultrasound simulations in heterogeneous, absorbing fluid media},
author = {E. Martin and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2015-Martin-ISNA.pdf},
doi = {10.1063/1.4934444},
year = {2015},
date = {2015-06-29},
booktitle = {International Symposium on Nonlinear Acoustics (AIP Conference Proceedings)},
volume = {1685},
pages = {070007},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
J. Jaros, V. Nikl, B. E. Treeby Large-scale ultrasound simulations using the hybrid OpenMP/MPI decomposition Conference Proceedings of the 3rd International Conference on Exascale Applications and Software, 2015, ISBN: 978-0-9926615-1-9. Links | BibTeX @conference{Jaros2015,
title = {Large-scale ultrasound simulations using the hybrid OpenMP/MPI decomposition},
author = {J. Jaros and V. Nikl and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2015-Jaros-EASC.pdf},
isbn = {978-0-9926615-1-9},
year = {2015},
date = {2015-04-21},
booktitle = {Proceedings of the 3rd International Conference on Exascale Applications and Software},
pages = {115--119},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2014
|
Journal Articles
|
B. E. Treeby, B. T. Cox Modeling power law absorption and dispersion in viscoelastic solids using a split-field and the fractional Laplacian Journal Article J. Acoust. Soc. Am., 136 (4), pp. 1499-1510, 2014. Links | BibTeX @article{Treeby2014,
title = {Modeling power law absorption and dispersion in viscoelastic solids using a split-field and the fractional Laplacian},
author = {B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2014-Treeby-JASA.pdf},
doi = {10.1121/1.4894790},
year = {2014},
date = {2014-08-16},
journal = {J. Acoust. Soc. Am.},
volume = {136},
number = {4},
pages = {1499-1510},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
M. D. Brown, T. J. Allen, B. T. Cox, B. E. Treeby Control of optically generated ultrasound fields using binary amplitude holograms Conference IEEE International Ultrasonics Symposium, 2014. Links | BibTeX @conference{Brown2014,
title = {Control of optically generated ultrasound fields using binary amplitude holograms},
author = {M. D. Brown and T. J. Allen and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2014-Brown-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2014.0254},
year = {2014},
date = {2014-09-03},
booktitle = {IEEE International Ultrasonics Symposium},
pages = {1037--1040},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
J. L. Robertson, B. T. Cox, B. E. Treeby Quantifying numerical errors in the simulation of transcranial ultrasound using pseudospectral methods Conference IEEE International Ultrasonics Symposium, 2014. Links | BibTeX @conference{Robertson2014,
title = {Quantifying numerical errors in the simulation of transcranial ultrasound using pseudospectral methods},
author = {J. L. Robertson and B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2014-Robertson-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2014.0498},
year = {2014},
date = {2014-09-03},
booktitle = {IEEE International Ultrasonics Symposium},
pages = {2000-2003},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
L. Demi, B. E. Treeby, M. D. Verweij Comparison between two different full-wave methods for the computation of nonlinear ultrasound fields in inhomogeneous and attenuating tissue Conference IEEE International Ultrasonics Symposium, 2014. Links | BibTeX @conference{Demi2014,
title = {Comparison between two different full-wave methods for the computation of nonlinear ultrasound fields in inhomogeneous and attenuating tissue},
author = {L. Demi and B. E. Treeby and M. D. Verweij},
url = {http://bug.medphys.ucl.ac.uk/papers/2014-Demi-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2014.0362},
year = {2014},
date = {2014-09-03},
booktitle = {IEEE International Ultrasonics Symposium},
pages = {1464--1467},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
B. E. Treeby, J. Jaros, D. Rohrbach, B. T. Cox Modelling elastic wave propagation using the k-Wave MATLAB toolbox Conference IEEE International Ultrasonics Symposium, 2014. Links | BibTeX @conference{Treeby2014a,
title = {Modelling elastic wave propagation using the k-Wave MATLAB toolbox},
author = {B. E. Treeby and J. Jaros and D. Rohrbach and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2014-Treeby-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2014.0037},
year = {2014},
date = {2014-09-03},
booktitle = {IEEE International Ultrasonics Symposium},
pages = {146--149},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
Book Chapters
|
M. D. Verweij, B. E. Treeby, K. W. A. van Dongen, L. Demi Simulation of Ultrasound Fields Book Chapter Panetta, D; Demi, M (Ed.): Comprehensive Biomedical Physics, 2 , Chapter 19, pp. 465–500, Elsevier, Amsterdam, 2014. Links | BibTeX @inbook{Verweij2014,
title = {Simulation of Ultrasound Fields},
author = {M. D. Verweij and B. E. Treeby and K. W. A. van Dongen and L. Demi},
editor = {D. Panetta and M. Demi},
url = {http://bug.medphys.ucl.ac.uk/papers/2014-Verweij-CBP.pdf},
doi = {10.1016/B978-0-444-53632-7.00221-5},
year = {2014},
date = {2014-09-01},
booktitle = {Comprehensive Biomedical Physics},
volume = {2},
pages = {465--500},
publisher = {Elsevier},
address = {Amsterdam},
chapter = {19},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
2013
|
Journal Articles
|
B. E. Treeby Modeling nonlinear wave propagation on nonuniform grids using a mapped k-space pseudospectral method Journal Article IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 60 (10), pp. 2208–2213, 2013. Links | BibTeX @article{Treeby2013a,
title = {Modeling nonlinear wave propagation on nonuniform grids using a mapped k-space pseudospectral method},
author = {B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2013-Treeby-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2013.2812},
year = {2013},
date = {2013-10-01},
journal = {IEEE Trans. Ultrason. Ferroelectr. Freq. Control},
volume = {60},
number = {10},
pages = {2208--2213},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby Acoustic attenuation compensation in photoacoustic tomography using time-variant filtering Journal Article J. Biomed. Opt., 18 (3), pp. 036008, 2013. Links | BibTeX @article{Treeby2013b,
title = {Acoustic attenuation compensation in photoacoustic tomography using time-variant filtering},
author = {B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2013-Treeby-JBO.pdf},
doi = {10.1117/1.JBO.18.3.036008},
year = {2013},
date = {2013-03-01},
journal = {J. Biomed. Opt.},
volume = {18},
number = {3},
pages = {036008},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
E. S. Wise, B. E. Treeby Full-wave nonlinear ultrasound simulation in an axisymmetric coordinate system using the discrete sine and cosine transforms Conference IEEE International Ultrasonics Symposium, 2013. Links | BibTeX @conference{Wise2013,
title = {Full-wave nonlinear ultrasound simulation in an axisymmetric coordinate system using the discrete sine and cosine transforms},
author = {E. S. Wise and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2013-Wise-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2013.0349},
year = {2013},
date = {2013-07-21},
booktitle = {IEEE International Ultrasonics Symposium},
pages = {1374-1377},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
B. E. Treeby, B. T. Cox A computationally efficient elastic wave model for media with power-law absorption Conference IEEE International Ultrasonics Symposium, 2013. Links | BibTeX @conference{Treeby2013,
title = {A computationally efficient elastic wave model for media with power-law absorption},
author = {B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2013-Treeby-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2013.0266},
year = {2013},
date = {2013-07-21},
booktitle = {IEEE International Ultrasonics Symposium},
pages = {1037--1040},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
T. Oruganti, J. Laufer, B. E. Treeby Vessel filtering of photoacoustic images Conference Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 8581 , 2013. Links | BibTeX @conference{Oruganti2013,
title = {Vessel filtering of photoacoustic images},
author = {T. Oruganti and J. Laufer and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2013-Oruganti-SPIE.pdf},
doi = {10.1117/12.2005988},
year = {2013},
date = {2013-03-04},
booktitle = {Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing},
volume = {8581},
pages = {85811W},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2012
|
Journal Articles
|
K. Firouzi, B. T. Cox, B. E. Treeby, N. Saffari A first-order k-space model for elastic wave propagation in heterogeneous media Journal Article J. Acoust. Soc. Am., 132 (3), pp. 1271–1283, 2012. Links | BibTeX @article{Firouzi2012,
title = {A first-order k-space model for elastic wave propagation in heterogeneous media},
author = {K. Firouzi and B. T. Cox and B. E. Treeby and N. Saffari},
url = {http://bug.medphys.ucl.ac.uk/papers/2012-Firouzi-JASA.pdf},
doi = {10.1121/1.4730897},
year = {2012},
date = {2012-09-01},
journal = {J. Acoust. Soc. Am.},
volume = {132},
number = {3},
pages = {1271--1283},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, J. Jaros, A. P. Rendell, B. T. Cox Modeling nonlinear ultrasound propagation in heterogeneous media with power law absorption using a k-space pseudospectral method Journal Article J. Acoust. Soc. Am., 131 (6), pp. 4324–4336, 2012. Links | BibTeX @article{Treeby2012,
title = {Modeling nonlinear ultrasound propagation in heterogeneous media with power law absorption using a k-space pseudospectral method},
author = {B. E. Treeby and J. Jaros and A. P. Rendell and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2012-Treeby-JASA.pdf},
doi = {10.1121/1.4712021},
year = {2012},
date = {2012-01-01},
journal = {J. Acoust. Soc. Am.},
volume = {131},
number = {6},
pages = {4324--4336},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
N. Nandapalan, J. Jaros, A. P. Rendell, B. E. Treeby Implementation of 3D FFTs across multiple GPUs in shared memory environments Conference 13th International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT), 2012. Links | BibTeX @conference{Nandapalan2012,
title = {Implementation of 3D FFTs across multiple GPUs in shared memory environments},
author = {N. Nandapalan and J. Jaros and A. P. Rendell and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2012-Nandapalan-PDCAT.pdf},
doi = {10.1109/PDCAT.2012.79},
year = {2012},
date = {2012-12-14},
booktitle = {13th International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT)},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
K. Wang, E. Teoh, J. Jaros, B. E. Treeby Modelling nonlinear ultrasound propagation in absorbing media using the k-Wave toolbox: Experimental validation Conference IEEE International Ultrasonics Symposium, 2012. Links | BibTeX @conference{Wang2012,
title = {Modelling nonlinear ultrasound propagation in absorbing media using the k-Wave toolbox: Experimental validation},
author = {K. Wang and E. Teoh and J. Jaros and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2012-Wang-IEEEIUS.pdf},
doi = {10.1109/ULTSYM.2012.0130},
year = {2012},
date = {2012-10-07},
booktitle = {IEEE International Ultrasonics Symposium},
pages = {523--526},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
A. Haigh, B. E. Treeby, E. McCreath Ultrasound simulation on the cell broadband engine using the Westervelt equation Conference 12th International Conference on Algorithms and Architectures for Parallel Processing, Part 1, LNCS, 7439 , 2012. Links | BibTeX @conference{Haigh2012,
title = {Ultrasound simulation on the cell broadband engine using the Westervelt equation},
author = {A. Haigh and B. E. Treeby and E. McCreath},
url = {http://bug.medphys.ucl.ac.uk/papers/2012-Haigh-ICA3PP.pdf},
doi = {10.1007/978-3-642-33078-0_18},
year = {2012},
date = {2012-09-04},
booktitle = {12th International Conference on Algorithms and Architectures for Parallel Processing, Part 1, LNCS},
volume = {7439},
pages = {241--252},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
J. Jaros, B. E. Treeby, A. P. Rendell Use of multiple GPUs on shared memory multiprocessors for ultrasound propagation simulations Conference 10th Australasian Symposium on Parallel and Distributed Computing, 127 , 2012, ISBN: 978-1-921770-08-1. Links | BibTeX @conference{Jaros2012,
title = {Use of multiple GPUs on shared memory multiprocessors for ultrasound propagation simulations},
author = {J. Jaros and B. E. Treeby and A. P. Rendell},
url = {http://bug.medphys.ucl.ac.uk/papers/2012-Jaros-AUSPDC.pdf},
isbn = {978-1-921770-08-1},
year = {2012},
date = {2012-01-30},
booktitle = {10th Australasian Symposium on Parallel and Distributed Computing},
volume = {127},
pages = {43--52},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2011
|
Journal Articles
|
B. E. Treeby, T. K. Varslot, E. Z. Zhang, J. Laufer, P. C. Beard Automatic sound speed selection in photoacoustic image reconstruction using an autofocus approach Journal Article J. Biomed. Opt., 16 (9), pp. 090501, 2011. Links | BibTeX @article{Treeby2011c,
title = {Automatic sound speed selection in photoacoustic image reconstruction using an autofocus approach},
author = {B. E. Treeby and T. K. Varslot and E. Z. Zhang and J. Laufer and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2011-Treeby-JBO.pdf},
doi = {10.1117/1.3619139},
year = {2011},
date = {2011-09-01},
journal = {J. Biomed. Opt.},
volume = {16},
number = {9},
pages = {090501},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
P. Shao, B. T. Cox, R. Zemp Estimating optical absorption, scattering, and Grueneisen distributions with multiple-illumination photoacoustic tomography Journal Article Applied Optics, 50 (19), pp. 3145-3154, 2011. Links | BibTeX @article{2011-Shao-AO,
title = {Estimating optical absorption, scattering, and Grueneisen distributions with multiple-illumination photoacoustic tomography},
author = {P. Shao and B. T. Cox and R. Zemp},
url = {http://bug.medphys.ucl.ac.uk/papers/2011-Shao-AO.pdf},
doi = {10.1364/AO.50.003145},
year = {2011},
date = {2011-06-22},
journal = {Applied Optics},
volume = {50},
number = {19},
pages = {3145-3154},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, B. T. Cox A k-space Green's function solution for acoustic initial value problems in homogeneous media with power law absorption Journal Article J. Acoust. Soc. Am., 129 (6), pp. 3652–3660, 2011. Links | BibTeX @article{Treeby2011b,
title = {A k-space Green's function solution for acoustic initial value problems in homogeneous media with power law absorption},
author = {B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2011-Treeby-JASA.pdf},
doi = {10.1121/1.3583537},
year = {2011},
date = {2011-06-01},
journal = {J. Acoust. Soc. Am.},
volume = {129},
number = {6},
pages = {3652--3660},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, E. Z. Zhang, A. S. Thomas, B. T. Cox Measurement of the ultrasound attenuation and dispersion in whole human blood and its components from 0-70 MHz Journal Article Ultrasound Med. Biol., 37 (2), pp. 289–300, 2011. Links | BibTeX @article{Treeby2011a,
title = {Measurement of the ultrasound attenuation and dispersion in whole human blood and its components from 0-70 MHz},
author = {B. E. Treeby and E. Z. Zhang and A. S. Thomas and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2011-Treeby-UMB.pdf},
doi = {10.1016/j.ultrasmedbio.2010.10.020},
year = {2011},
date = {2011-02-01},
journal = {Ultrasound Med. Biol.},
volume = {37},
number = {2},
pages = {289--300},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
B. E. Treeby, M. Tumen, B. T. Cox Time domain simulation of harmonic ultrasound images and beam patterns in 3D using the k-space pseudospectral method Conference 14th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Part I, LNCS, 6891 , 2011. Links | BibTeX @conference{Treeby2011e,
title = {Time domain simulation of harmonic ultrasound images and beam patterns in 3D using the k-space pseudospectral method},
author = {B. E. Treeby and M. Tumen and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2011-Treeby-MICCAI.pdf},
doi = {10.1007/978-3-642-23623-5_46},
year = {2011},
date = {2011-09-18},
booktitle = {14th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Part I, LNCS},
volume = {6891},
pages = {363--370},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
B. E. Treeby, J. Laufer, E. Z. Zhang, F. C. Norris, M. F. Lythgoe, P. C. Beard, B. T. Cox Acoustic attenuation compensation in photoacoustic tomography: Application to high resolution 3D imaging of vascular networks in mice Conference Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 7899 , 2011. Links | BibTeX @conference{Treeby2011d,
title = {Acoustic attenuation compensation in photoacoustic tomography: Application to high resolution 3D imaging of vascular networks in mice},
author = {B. E. Treeby and J. Laufer and E. Z. Zhang and F. C. Norris and M. F. Lythgoe and P. C. Beard and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2011-Treeby-SPIE.pdf},
doi = {10.1117/12.874530},
year = {2011},
date = {2011-02-22},
booktitle = {Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing},
volume = {7899},
pages = {78992Y },
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2010
|
Journal Articles
|
B. T. Cox, J. Laufer, P. C. Beard Quantitative Photoacoustic Image Reconstruction using Fluence Dependent Chromophores Journal Article Biomed. Opt. Exp., 1 (1), pp. 201-208, 2010. Links | BibTeX @article{2010-Cox-BOE,
title = {Quantitative Photoacoustic Image Reconstruction using Fluence Dependent Chromophores},
author = {B. T. Cox and J. Laufer and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2010-Cox-BOE.pdf},
doi = {10.1364/BOE.1.000201},
year = {2010},
date = {2010-07-16},
journal = {Biomed. Opt. Exp.},
volume = {1},
number = {1},
pages = {201-208},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, B. T. Cox k-Wave: MATLAB toolbox for the simulation and reconstruction of photoacoustic wave-fields Journal Article J. Biomed. Opt., 15 (2), pp. 021314, 2010. Links | BibTeX @article{Treeby2010,
title = {k-Wave: MATLAB toolbox for the simulation and reconstruction of photoacoustic wave-fields},
author = {B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2010-Treeby-JBO.pdf},
doi = {10.1117/1.3360308},
year = {2010},
date = {2010-03-16},
journal = {J. Biomed. Opt.},
volume = {15},
number = {2},
pages = {021314},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
J. Laufer, B. T. Cox, E. Z. Zhang, P. C. Beard Quantitative determination of chromophore concentrations from 2D photoacoustic images using a nonlinear model-based inversion scheme Journal Article Applied Optics, 49 (8), pp. 1219-1233, 2010. Links | BibTeX @article{2010-Laufer-AO,
title = {Quantitative determination of chromophore concentrations from 2D photoacoustic images using a nonlinear model-based inversion scheme},
author = {J. Laufer and B. T. Cox and E. Z. Zhang and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2010-Laufer-AO.pdf},
doi = {10.1364/AO.49.001219},
year = {2010},
date = {2010-03-03},
journal = {Applied Optics},
volume = {49},
number = {8},
pages = {1219-1233},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. T. Cox, B. E. Treeby Artifact trapping during time reversal photoacoustic imaging for acoustically heterogeneous media Journal Article IEEE Trans. Med. Imaging, 29 (2), pp. 387–396, 2010. Links | BibTeX @article{Cox2010a,
title = {Artifact trapping during time reversal photoacoustic imaging for acoustically heterogeneous media},
author = {B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2010-Cox-IEEETMI.pdf},
doi = {10.1109/TMI.2009.2032358},
year = {2010},
date = {2010-02-01},
journal = {IEEE Trans. Med. Imaging},
volume = {29},
number = {2},
pages = {387--396},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, B. T. Cox Modeling power law absorption and dispersion for acoustic propagation using the fractional Laplacian Journal Article J. Acoust. Soc. Am., 127 (5), pp. 2741–2748, 2010. Links | BibTeX @article{Treeby2010a,
title = {Modeling power law absorption and dispersion for acoustic propagation using the fractional Laplacian},
author = {B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2010-Treeby-JASA.pdf},
doi = {10.1121/1.3377056},
year = {2010},
date = {2010-01-01},
journal = {J. Acoust. Soc. Am.},
volume = {127},
number = {5},
pages = {2741--2748},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. E. Treeby, E. Z. Zhang, B. T. Cox Photoacoustic tomography in absorbing acoustic media using time reversal Journal Article Inverse Probl., 26 (11), pp. 115003, 2010. Links | BibTeX @article{Treeby2010b,
title = {Photoacoustic tomography in absorbing acoustic media using time reversal},
author = {B. E. Treeby and E. Z. Zhang and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2010-Treeby-INVPROB.pdf},
doi = {10.1088/0266-5611/26/11/115003},
year = {2010},
date = {2010-01-01},
journal = {Inverse Probl.},
volume = {26},
number = {11},
pages = {115003},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
B. T. Cox, B. E. Treeby Effect of sensor directionality on photoacoustic imaging: a study using the k-Wave toolbox Conference Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 7564 , 2010. Links | BibTeX @conference{Cox2010,
title = {Effect of sensor directionality on photoacoustic imaging: a study using the k-Wave toolbox},
author = {B. T. Cox and B. E. Treeby},
url = {http://bug.medphys.ucl.ac.uk/papers/2010-Cox-SPIE.pdf},
doi = {10.1117/12.841671},
year = {2010},
date = {2010-02-23},
booktitle = {Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing},
volume = {7564},
pages = {75640I},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2009
|
Journal Articles
|
B. E. Treeby, B. T. Cox, E. Z. Zhang, S. K. Patch, P. C. Beard Measurement of broadband temperature-dependent ultrasonic attenuation and dispersion using photoacoustics Journal Article IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 56 (8), pp. 1666–1676, 2009. Links | BibTeX @article{Treeby2009b,
title = {Measurement of broadband temperature-dependent ultrasonic attenuation and dispersion using photoacoustics},
author = {B. E. Treeby and B. T. Cox and E. Z. Zhang and S. K. Patch and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2009-Treeby-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2009.1231},
year = {2009},
date = {2009-07-31},
journal = {IEEE Trans. Ultrason. Ferroelectr. Freq. Control},
volume = {56},
number = {8},
pages = {1666--1676},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. T. Cox, S. R. Arridge, P. C. Beard Estimating chromophore distributions from multiwavelength photoacoustic images Journal Article J. Opt. Soc. Am. A, 26 (2), pp. 443-455, 2009. Links | BibTeX @article{2009-Cox-JOSA,
title = {Estimating chromophore distributions from multiwavelength photoacoustic images},
author = {B. T. Cox and S. R. Arridge and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2009-Cox-JOSA.pdf},
doi = {10.1364/JOSAA.26.000443},
year = {2009},
date = {2009-01-30},
journal = {J. Opt. Soc. Am. A},
volume = {26},
number = {2},
pages = {443-455},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Conferences
|
B. E. Treeby, B. T. Cox Fast, tissue-realistic models of photoacoustic wave propagation for homogeneous attenuating media Conference Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 7177 , 2009. Links | BibTeX @conference{Treeby2009c,
title = {Fast, tissue-realistic models of photoacoustic wave propagation for homogeneous attenuating media},
author = {B. E. Treeby and B. T. Cox},
url = {http://bug.medphys.ucl.ac.uk/papers/2009-Treeby-SPIE.pdf},
doi = {10.1117/12.806794},
year = {2009},
date = {2009-02-12},
booktitle = {Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing},
volume = {7177},
pages = {717716},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
2008
|
Journal Articles
|
B. T. Cox, P. C. Beard Photoacoustic tomography with a single detector in a reverberant cavity Journal Article J. Acoust. Soc. Am., 125 (3), pp. 1426-1436, 2008. Links | BibTeX @article{2009-Cox-JASA,
title = {Photoacoustic tomography with a single detector in a reverberant cavity},
author = {B. T. Cox and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2009-Cox-JASA.pdf},
doi = {10.1121/1.3068445},
year = {2008},
date = {2008-12-11},
journal = {J. Acoust. Soc. Am.},
volume = {125},
number = {3},
pages = {1426-1436},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2007
|
Journal Articles
|
B. T. Cox, S. R. Arridge, P. C. Beard Photoacoustic tomography with a limited-aperture planar sensor and a reverberant cavity Journal Article Inv. Prob., 23 , pp. S95-S112, 2007. Links | BibTeX @article{2007-Cox-IP,
title = {Photoacoustic tomography with a limited-aperture planar sensor and a reverberant cavity},
author = {B. T. Cox and S. R. Arridge and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2007-Cox-IP.pdf},
doi = {10.1088/0266-5611/23/6/S08},
year = {2007},
date = {2007-11-23},
journal = {Inv. Prob.},
volume = {23},
pages = {S95-S112},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. T. Cox, S. Kara, S. R. Arridge, P. C. Beard k-space propagation models for acoustically heterogeneous media: Application to biomedical photoacoustics Journal Article J. Acoust. Soc. Am., 121 (6), pp. 3453–3464, 2007. Links | BibTeX @article{Cox2007,
title = {k-space propagation models for acoustically heterogeneous media: Application to biomedical photoacoustics},
author = {B. T. Cox and S. Kara and S. R. Arridge and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2007-Cox-JASA.pdf},
doi = {10.1121/1.2717409},
year = {2007},
date = {2007-06-01},
journal = {J. Acoust. Soc. Am.},
volume = {121},
number = {6},
pages = {3453--3464},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2006
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Journal Articles
|
B. T. Cox, P. C. Beard The Frequency-Dependent Directivity of a Planar Fabry-Perot Polymer Film Ultrasound Sensor Journal Article IEEE Trans. Ultra. Ferro. Freq. Cont., 52 (2), pp. 394-404, 2006. Links | BibTeX @article{2007-Cox-IEEETUFFC,
title = {The Frequency-Dependent Directivity of a Planar Fabry-Perot Polymer Film Ultrasound Sensor},
author = {B. T. Cox and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2007-Cox-IEEETUFFC.pdf},
doi = {10.1109/TUFFC.2007.253},
year = {2006},
date = {2006-08-07},
journal = {IEEE Trans. Ultra. Ferro. Freq. Cont.},
volume = {52},
number = {2},
pages = {394-404},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2005
|
Journal Articles
|
B. T. Cox, S. R. Arridge, K. Koestli, P. C. Beard Two-dimensional quantitative photoacoustic image reconstruction of absorption distributions in scattering media by use of a simple iterative method Journal Article Applied Optics, 45 (8), pp. 1866-1875, 2005. Links | BibTeX @article{2006-Cox-AO,
title = {Two-dimensional quantitative photoacoustic image reconstruction of absorption distributions in scattering media by use of a simple iterative method},
author = {B. T. Cox and S. R. Arridge and K. Koestli and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2006-Cox-AO.pdf},
doi = {10.1364/AO.45.001866},
year = {2005},
date = {2005-08-15},
journal = {Applied Optics},
volume = {45},
number = {8},
pages = {1866-1875},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
B. T. Cox, P. C. Beard Fast calculation of pulsed photoacoustic fields in fluids using k-space methods Journal Article J. Acoust. Soc. Am., 117 (6), pp. 3616–3627, 2005. Links | BibTeX @article{Cox2005,
title = {Fast calculation of pulsed photoacoustic fields in fluids using k-space methods},
author = {B. T. Cox and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2005-Cox-JASA.pdf},
doi = {10.1121/1.1920227},
year = {2005},
date = {2005-06-01},
journal = {J. Acoust. Soc. Am.},
volume = {117},
number = {6},
pages = {3616--3627},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2004
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Conferences
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B. T. Cox, J. Laufer, K. P. Kostli, P. C. Beard Experimental validation of photoacoustic k-space propagation models Conference Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 5320 , 2004. Links | BibTeX @conference{Cox2004,
title = {Experimental validation of photoacoustic k-space propagation models},
author = {B. T. Cox and J. Laufer and K. P. Kostli and P. C. Beard},
url = {http://bug.medphys.ucl.ac.uk/papers/2004-Cox-SPIE.pdf},
doi = {10.1117/12.531178},
year = {2004},
date = {2004-07-12},
booktitle = {Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing},
volume = {5320},
pages = {238},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
|
0000
|
Journal Articles
|
Safety Review of Therapeutic Ultrasound for Spinal Cord Neuromodulation and Blood−Spinal Cord Barrier Opening Journal Article Ultrasound in Medicine and Biology, 50 , pp. 317−331, 0000. Links | BibTeX @article{2024-Xu-UMB.pdf,
title = {Safety Review of Therapeutic Ultrasound for Spinal Cord Neuromodulation and Blood−Spinal Cord Barrier Opening},
url = {http://bug.medphys.ucl.ac.uk/papers/2024-Xu-UMB.pdf},
doi = {10.1016/j.ultrasmedbio.2023.11.007},
journal = {Ultrasound in Medicine and Biology},
volume = {50},
pages = {317−331},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
