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2018

Journal Articles

V. Suomi; J. Jaros; B. E. Treeby; R. Cleveland

Full modeling of high-intensity focused ultrasound and thermal heating in the kidney using realistic patient models Journal Article

IEEE Trans. Biomed. Eng., 65 (11), pp. 2660-2670, 2018.

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V. Suomi; B. E. Treeby; J. Jaros; P. Makela; M. Anttinen; J. Saunavaara; T. Sainio; A. Kiviniemi; R. Blanco

Transurethral ultrasound therapy of the prostate in the presence of calcifications: A simulation study Journal Article

Med. Phys., 45 (11), pp. 4793-4805, 2018.

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E. S. Wise; B. T. Cox; B. E. Treeby

Bandwidth-based mesh adaptation in multiple dimensions Journal Article

J. Comp. Phys., 371 , pp. 651-662, 2018.

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B. E. Treeby; F. Lucka; E. Martin; B. T. Cox

Equivalent-source acoustic holography for projecting measured ultrasound fields through complex media Journal Article

IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 65 (10), pp. 1857-1864, 2018.

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B. E. Treeby; E. S. Wise; B. T. Cox

Nonstandard Fourier Pseudospectral Time Domain (PSTD) Schemes for Partial Differential Equations Journal Article

Commun. Comput. Phys., 24 (3), pp. 623-634, 2018.

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S. Rajagopal; T. Sainsbury; B. E. Treeby; B. T. Cox

Laser generated ultrasound sources using carbon-polymer nanocomposites for high frequency metrology Journal Article

J. Acoust. Soc. Am., 144 (2), pp. 584-597, 2018.

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J. L. Robertson; J. Urban; J. Stitzel; B. E. Treeby

The effects of image homogenisation on simulated transcranial ultrasound propagation Journal Article

Phys. Med. Biol., 63 , pp. 145014, 2018.

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M. Bakaric; E. Martin; P. S. Georgiou; B. T. Cox; H. Payne; B. E. Treeby

Experimental study of beam distortion due to fiducial markers during salvage HIFU in the prostate Journal Article

Journal of Therapeutic Ultrasound, 6 (1), pp. 1-12, 2018.

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B. E. Treeby; J. Budisky; E. S. Wise; J. Jaros; B. T. Cox

Rapid calculation of acoustic fields from arbitrary continuous-wave sources Journal Article

J. Acoust. Soc. Am., 143 (1), pp. 529-537, 2018.

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Conferences

B. T. Cox; B. E. Treeby

Accurate time-varying sources in k-space pseudospectral time domain acoustic simulations Conference

IEEE International Ultrasonics Symposium, 2018.

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B. E. Treeby; F. Vaverka; J. Jaros

Performance and accuracy analysis of nonlinear k-Wave simulations using local domain decomposition with an 8-GPU server Conference

Proc. Mtgs. Acoust., 34 , 2018.

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V. Suomi; B. E. Treeby; J. Jaros; J. Saunavaara; A. Kiviniemi; R. Blanco

The effect of tissue physiological variability on transurethral ultrasound therapy of the prostate Conference

40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2018.

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K. Kadlubiak; J. Jaros; B. E. Treeby

GPU-Accelerated Simulation of Elastic Wave Propagation Conference

2018 International Conference on High Performance Computing & Simulation (HPCS), IEEE, 2018.

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M. Cudova; B. E. Treeby; J. Jaros

Design of HIFU treatment plans using an evolutionary strategy Conference

Proceedings of the Genetic and Evolutionary Computation Conference (GECCO) Companion, 2018.

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2017

Journal Articles

M. D. Brown; B. T. Cox; B. E. Treeby

Design of multi-frequency acoustic kinoforms Journal Article

Appl. Phys. Lett., 111 (24), pp. 244101, 2017.

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E. Martin; E. Z. Zhang; J. A. Guggenheim; P. C. Beard; B. E. Treeby

Rapid spatial mapping of focused ultrasound fields using a planar Fabry-Perot sensor Journal Article

IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 64 (11), pp. 1711-1722, 2017.

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E. S. Wise; B. T. Cox; B. E. Treeby

Mesh density functions based on local bandwidth applied to moving mesh methods Journal Article

Commun. Comput. Phys., 22 (5), pp. 1286-1308, 2017.

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J. L. Robertson; B. T. Cox; J. Jaros; B. E. Treeby

Accurate simulation of transcranial ultrasound propagation for ultrasonic neuromodulation and stimulation Journal Article

J. Acoust. Soc. Am., 141 (3), pp. 1726-1738, 2017.

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M. Perez Liva; J. L. Herraiz; J. M. Udias; E. Miller; B. T. Cox; B. E. Treeby

Time domain reconstruction of sound speed and attenuation in ultrasound computed tomography using full wave inversion Journal Article

J. Acoust. Soc. Am., 141 (3), pp. 1595-1604, 2017.

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J. L. Robertson; E. Martin; B. T. Cox; B. E. Treeby

Sensitivity of simulated transcranial ultrasound fields to acoustic medium property maps Journal Article

Phys. Med. Biol., 62 (7), pp. 2559-2580, 2017.

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M. D. Brown; D. I. Nikitichev; B. E. Treeby; B. T. Cox

Generating arbitrary ultrasound fields with tailored optoacoustic surface profiles Journal Article

Appl. Phys. Lett., 110 (9), pp. 094102, 2017.

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P. S. Georgiou; J. Jaros; H. Payne; C. Allen; T. T. Shah; H. U. Ahmed; E. Gibson; D. Barratt; B. E. Treeby

Beam distortion due to gold fiducial markers during salvage high-intensity focused ultrasound in the prostate Journal Article

Med. Phys., 44 (2), pp. 679–693, 2017.

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Conferences

M. D. Brown; B. T. Cox; B. E. Treeby

Investigating the effect of thickness and frequency spacing on multi-frequency acoustic kinoforms Conference

IEEE International Ultrasonics Symposium, 2017.

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S. Rajagopal; T. Sainsbury; B. E. Treeby; B. T. Cox

Laser generated ultrasound sources using polymer nanocomposites for high frequency metrology Conference

IEEE International Ultrasonics Symposium, 2017.

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E. S. Wise; J. L. Robertson; B. T. Cox; B. E. Treeby

Staircase-free acoustic sources for grid-based models of wave propagation Conference

IEEE International Ultrasonics Symposium, 2017.

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D. R. Ramasawmy; E. Martin; J. A. Guggenheim; B. T. Cox; B. E. Treeby

Directivity of a planar hard-dielectric Fabry-Perot optical ultrasound sensor Conference

IEEE International Ultrasonics Symposium, 2017.

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2016

Journal Articles

J. Jaros; F. Vaverka; B. E. Treeby

Spectral domain decomposition using local Fourier basis: Application to ultrasound simulation on a cluster of GPUs Journal Article

Supercomputing Frontiers and Innovations, 3 (3), pp. 39–54, 2016.

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S. R. Arridge; M. M. Betcke; B. T. Cox; F. Lucka; B. E. Treeby

On the adjoint operator in photoacoustic tomography Journal Article

Inv. Problems, 32 (11), pp. 115012, 2016.

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E. Martin; Y. T. Ling; B. E. Treeby

Simulating focused ultrasound transducers using discrete sources on regular cartesian grids Journal Article

IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 63 (10), pp. 1535–1542, 2016.

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J. Jaros; A. P. Rendell; B. E. Treeby

Full-wave nonlinear ultrasound simulation on distributed clusters with applications in high-intensity focused ultrasound Journal Article

Int. J. High Perform. Comput., 30 (2), pp. 137–155, 2016.

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M. D. Brown; J. Jaros; B. T. Cox; B. E. Treeby

Control of broadband optically generated ultrasound pulses using binary amplitude holograms Journal Article

J. Acoust. Soc. Am., 139 (4), pp. 1637–1467, 2016.

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Conferences

M. D. Brown; E. Martin; B. T. Cox; B. E. Treeby

Single pulse illumination of multi-layer photoacoustic holograms for patterned ultrasound field generation Conference

IEEE International Ultrasonics Symposium, 2016.

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V. Suomi; J. Jaros; B. E. Treeby; R. Cleveland

Nonlinear 3-D simulation of high-intensity focused ultrasound therapy in the kidney Conference

IEEE 38th Annual International Conference of the Engineering in Medicine and Biology Society (EMBC), 2016.

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M. Perez Liva; J. L. Herraiz; J. M Udias; B. T. Cox; B. E. Treeby

Full-wave attenuation reconstruction in the time domain for ultrasound computed tomography Conference

IEEE 13th International Symposium on Biomedical Imaging (ISBI), 2016.

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B. E. Treeby; J. Jaros; B. T. Cox

Advanced photoacoustic image reconstruction using the k-Wave toolbox Conference

Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 9708 , 2016.

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2015

Conferences

Y. T. Ling; E. Martin; B. E. Treeby

Discrete source model for simulating bowl-shaped focused ultrasound transducers on regular grids: Design and experimental validation Conference

IEEE International Ultrasonics Symposium, 2015.

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E. Martin; E. Z. Zhang; P. C. Beard; B. E. Treeby

Rapid spatial mapping of the acoustic pressure in high intensity focused ultrasound fields at clinical intensities using a novel planar Fabry-Perot interferometer Conference

IEEE International Ultrasonics Symposium, 2015.

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B. E. Treeby; T. Saratoon

The contribution of shear wave absorption to ultrasound heating in bones: Coupled elastic and thermal modeling Conference

IEEE International Ultrasonics Symposium, 2015.

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E. S. Wise; B. T. Cox; B. E. Treeby

A monitor function for spectral moving mesh methods applied to nonlinear acoustics Conference

International Symposium on Nonlinear Acoustics (AIP Conference Proceedings), 1685 , 2015.

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E. Martin; B. E. Treeby

Experimental validation of computational models for large-scale nonlinear ultrasound simulations in heterogeneous, absorbing fluid media Conference

International Symposium on Nonlinear Acoustics (AIP Conference Proceedings), 1685 , 2015.

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J. Jaros; V. Nikl; B. E. Treeby

Large-scale ultrasound simulations using the hybrid OpenMP/MPI decomposition Conference

Proceedings of the 3rd International Conference on Exascale Applications and Software, 2015, ISBN: 978-0-9926615-1-9.

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Journal Articles

A. P. Jathoul; J. Laufer; O. Ogunlade; B. E. Treeby; B. T. Cox; E. Z. Zhang; P. Johnson; A. R. Pizzey; B. Philip; T. Marafioti; M. F. Lythgoe; R. B. Pedley; M. A. Pule; P. C. Beard

Deep in vivo photoacoustic imaging of mammalian tissues using a tyrosinase-based genetic reporter Journal Article

Nature Photonics, 9 , pp. 239–-246, 2015.

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2014

Conferences

M. D. Brown; T. J. Allen; B. T. Cox; B. E. Treeby

Control of optically generated ultrasound fields using binary amplitude holograms Conference

IEEE International Ultrasonics Symposium, 2014.

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J. L. Robertson; B. T. Cox; B. E. Treeby

Quantifying numerical errors in the simulation of transcranial ultrasound using pseudospectral methods Conference

IEEE International Ultrasonics Symposium, 2014.

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L. Demi; B. E. Treeby; M. D. Verweij

Comparison between two different full-wave methods for the computation of nonlinear ultrasound fields in inhomogeneous and attenuating tissue Conference

IEEE International Ultrasonics Symposium, 2014.

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B. E. Treeby; J. Jaros; D. Rohrbach; B. T. Cox

Modelling elastic wave propagation using the k-Wave MATLAB toolbox Conference

IEEE International Ultrasonics Symposium, 2014.

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Book Chapters

M. D. Verweij; B. E. Treeby; K. W. A. van Dongen; L. Demi

Simulation of Ultrasound Fields Book Chapter

Panetta, D; Demi, M (Ed.): Comprehensive Biomedical Physics, 2 , Chapter 19, pp. 465–500, Elsevier, Amsterdam, 2014.

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Journal Articles

B. E. Treeby; B. T. Cox

Modeling power law absorption and dispersion in viscoelastic solids using a split-field and the fractional Laplacian Journal Article

J. Acoust. Soc. Am., 136 (4), pp. 1499-1510, 2014.

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2013

Journal Articles

B. E. Treeby

Modeling nonlinear wave propagation on nonuniform grids using a mapped k-space pseudospectral method Journal Article

IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 60 (10), pp. 2208–2213, 2013.

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Conferences

E. S. Wise; B. E. Treeby

Full-wave nonlinear ultrasound simulation in an axisymmetric coordinate system using the discrete sine and cosine transforms Conference

IEEE International Ultrasonics Symposium, 2013.

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