Ben Cox

Ben Cox

Position: Professor of Biomedical Acoustics
Email: b.cox@ucl.ac.uk
Room: Malet Place Engineering Building, 3.03
Address: Department of Medical Physics and Biomedical Engineering
University College London
Malet Place Engineering Building
Gower Street, London, WC1E 6BT

About

Ben’s research interests are principally numerical modelling of acoustics, and image reconstruction in photoacoustic imaging and biomedical ultrasound. He is lectures on the principles of biomedical ultrasound.

Journal Publications

1.

B. T. Cox, B. Kaltenbacher, V. Nikolic, F. Lucka

Existence of solutions to k-Wave models of nonlinear ultrasound propagation in biological tissue Journal Article

In: Studies in Applied Mathematics, pp. e12771, 2024.

Links | BibTeX

2.

N. Huynh, E. Z. Zhang, O. Francies, F. Kuklis, T. J. Allen, J. Zhu, O. Abeyakoon, F. Lucka, M. M. Betcke, J. Jaros, S. R. Arridge, B. T. Cox, A. A. Plumb, P. C. Beard

A fast all-optical 3D photoacoustic scanner for clinical vascular imaging Journal Article

In: Nature Biomedical Engineering, 2024.

Links | BibTeX

3.

J. Poimala, B. T. Cox, A. Hauptmann

Compensating unknown speed of sound in learned fast 3D limited-view photoacoustic tomography Journal Article

In: Photoacoustics, 37 , pp. 100597, 2024.

Links | BibTeX

4.

T. Tarvainen, B. T. Cox

Quantitative photoacoustic tomography: modeling and inverse problems Journal Article

In: Journal of Biomedical Optics, 29 (S1), pp. S11509, 2023.

Links | BibTeX

5.

S. Kaupinmäki, B. T. Cox, S. R. Arridge

Phase-insensitive versus phase-sensitive ultrasound absorption tomography in the frequency domain Journal Article

In: Applied Mathematics in Science and Engineering, 31 (1), pp. 2252571, 2023.

Abstract | Links | BibTeX

6.

M. Bakaric, O. Ogunlade, P. Miloro, B. Zeqiri, B. T. Cox, B. E. Treeby

Characterisation of hydrophone sensitivity with temperature using a broadband laser-generated ultrasound source Journal Article

In: Metrologia, 60 (5), pp. 055002, 2023.

Links | BibTeX

7.

H. Assi, R. Cao, M. Casatelino, B. T. Cox, F. J. Gilbert, J. Gröhl, K. Gurusamy, L. Hacker, A. Ivory, J. Joseph, F. Knieling, M. Leahy, L. Lilaj, S. Manohar, I. Meglinski, C. Moran, A. Murray, A. Oraevsky, M. D. Pagel, M. Pramanik, J. Raymond, M. K. A. Singh, W. C. Vogt, L. Wang, S. Yang, Members of IPASC, S. Bohndiek

A review of a strategic roadmapping exercise to advance clinical translation of photoacoustic imaging: From current barriers to future adoption Journal Article

In: Photoacoustics, 32 , pp. 100539, 2023.

Abstract | Links | BibTeX

8.

M. Roberts, E. Martin, M. D. Brown, B. T. Cox, B. E. Treeby

open-UST: An Open-Source Ultrasound Tomography Transducer Array System Journal Article

In: IEEE Transactions of Ultrasonics, Ferroelectrics, and Frequency Control, 70 (7), pp. 782-791, 2023.

Links | BibTeX

9.

A. Stanziola, S. R. Arridge, B. T. Cox, B. E. Treeby

A learned Born series for highly-scattering media Journal Article

In: JASA Express Letters, 3 (5), pp. 052401, 2023.

Links | BibTeX

10.

S. Rajagopal, T. J. Allen, M. Berendt, D. Lin, S. Alam, D. J. Richardson, B. T. Cox

The effect of source backing materials and excitation pulse durations on laser-generated ultrasound waveforms Journal Article

In: J. Acoust. Soc. Am., 153 (5), pp. 2649, 2023.

Links | BibTeX

11.

M. D. Brown, B. T. Cox, B. E. Treeby

Binary volume acoustic holograms Journal Article

In: Physical Review Applied, 19 , pp. 044032, 2023.

Abstract | Links | BibTeX

12.

J. Zhu, N. Huynh, O. Ogunlade, R. Ansari, F. Lucka, B. T. Cox, P. C. Beard

Mitigating the Limited View Problem in Photoacoustic Tomography for a Planar Detection Geometry by Regularized Iterative Reconstruction Journal Article

In: IEEE Transactions on Medical Imaging, 42 (9), pp. 2603-2615, 2023.

Links | BibTeX

13.

A. Stanziola, S. R. Arridge, B. T. Cox, B. E. Treeby

j-Wave: An open-source differentiable wave simulator Journal Article

In: SoftwareX, 22 , pp. 101338, 2023.

Abstract | Links | BibTeX

14.

J. Gröhl, L. Hacker, B. T. Cox, K. Dreher, S. Morscher, A. Rakotondrainibe, F. Varray, L. Yip, W. Vogt, S. Bohndiek, IPASC

The IPASC data format: A consensus data format for photoacoustic imaging Journal Article

In: Photoacoustics, 26 , pp. 100339, 2022.

Abstract | Links | BibTeX

15.

F. Lucka, M. Perez Liva, B. E. Treeby, B. T. Cox

High resolution 3D ultrasonic breast imaging by time-domain full waveform inversion Journal Article

In: Inverse Problems, 38 (2), pp. 025008, 2022.

Links | BibTeX

16.

M. Bakaric, P. Miloro, A. Javaherian, B. T. Cox, B. E. Treeby, M. D. Brown

Measurement of the ultrasound attenuation and dispersion in 3D-printed photopolymer materials from 1 to 3.5 MHz Journal Article

In: J. Acoust. Soc. Am., 150 (4), pp. 2798-2805, 2021.

Links | BibTeX

17.

A. Javaherian, B. T. Cox

Ray-based inversion accounting for scattering for biomedical ultrasound tomography Journal Article

In: Inverse Problems, 37 (11), pp. 115003, 2021.

Links | BibTeX

18.

A. Stanziola, S. R. Arridge, B. T. Cox, B. E. Treeby

A Helmholtz equation solver using unsupervised learning: Application to transcranial ultrasound Journal Article

In: J. Comput. Phys., 441 , pp. 110430, 2021.

Links | BibTeX

19.

M. Bakaric, P. Fromme, A. Hurrell, S. Rajagopal, P. Miloro, B. Zeqiri, B. T. Cox, B. E. Treeby

Measurement of the temperature-dependent output of lead zirconate titanate transducers Journal Article

In: Ultrasonics, 114 , pp. 106378, 2021.

Links | BibTeX

20.

S. Rajagopal, B. T. Cox

Modelling laser ultrasound waveforms: The effect of varying pulse duration and material properties Journal Article

In: Journal of the Acoustical Society of America, 149 (3), pp. 2040-2054, 2021.

Abstract | Links | BibTeX

21.

S. Kaupinmäki, B. T. Cox, S. R. Arridge, C. Baker, D. Sinden, B. Zeqiri

Pyroelectric ultrasound sensor model: directional response Journal Article

In: Measurement Science and Technology, 32 , pp. 035106, 2021.

Links | BibTeX

22.

K. Pham, S. Noimark, N. Huynh, E. Z. Zhang, F. Kuklis, J. Jaros, A. E. Desjardins, B. T. Cox, P. C. Beard

Broadband All-Optical Plane-Wave Ultrasound Imaging System Based on a Fabry–Perot Scanner Journal Article

In: IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 68 (4), pp. 1007-1016, 2021.

Abstract | Links | BibTeX

23.

B. E. Treeby, E. S. Wise, F. Kuklis, J. Jaros, B. T. Cox

Nonlinear ultrasound simulation in an axisymmetric coordinate system using a k-space pseudospectral method Journal Article

In: J. Acoust. Soc. Am., 148 (4), pp. 2288-2300, 2020.

Links | BibTeX

24.

E. S. Wise, J. Jaros, B. T. Cox, B. E. Treeby

Pseudospectral Time-Domain (PSTD) Methods for the Wave Equation: Realizing Boundary Conditions with Discrete Sine and Cosine Transforms Journal Article

In: Journal of Theoretical and Computational Acoustics, pp. 2050021, 2020.

Links | BibTeX

25.

A. Javaherian, F. Lucka, B. T. Cox

Refraction-corrected ray-based inversion for three-dimensional ultrasound tomography of the breast Journal Article

In: Inverse Problems, 36 , pp. 125010, 2020.

Links | BibTeX

26.

A. Hauptmann, B. T. Cox

Deep learning in photoacoustic tomography: current approaches and future directions Journal Article

In: Journal of Biomedical Optics, 25 (11), pp. 112903, 2020.

Links | BibTeX

27.

C. Bench, A. Hauptmann, B. T. Cox

Toward accurate quantitative photoacoustic imaging: learning vascular blood oxygen saturation in three dimensions Journal Article

In: J. Biomed. Opt., 25 (8), pp. 085003, 2020.

Links | BibTeX

28.

S. Rajagopal, B. T. Cox

100 MHz bandwidth planar laser-generated ultrasound source for hydrophone calibration Journal Article

In: Ultrasonics, 108 , pp. 106218, 2020.

Links | BibTeX

29.

M. D. Brown, B. T. Cox, B. E. Treeby

Stackable acoustic holograms Journal Article

In: Appl. Phys. Lett., 116 , pp. 261901, 2020.

Links | BibTeX

30.

P. Patel, M. Roberts, B. T. Cox

Ultrasound Tomography (UST): a potential new breast screening modality? Journal Article

In: Acoustics Bulletin, 45 (2), pp. 51-55, 2020.

Links | BibTeX

31.

M. Bakaric, P. Miloro, B. Zeqiri, B. T. Cox, B. E. Treeby

The effect of curing temperature and time on the acoustic and optical properties of PVCP Journal Article

In: IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 67 (3), pp. 505-512, 2020.

Links | BibTeX

32.

D. R. Ramasawmy, B. T. Cox, B. E. Treeby

ElasticMatrix: A MATLAB toolbox for anisotropic elastic wave propagation in layered media Journal Article

In: SoftwareX, 11 , pp. 100397, 2020.

Links | BibTeX

33.

R. Hochuli, L. An, P. C. Beard, B. T. Cox

Estimating blood oxygenation from photoacoustic images: can a simple linear spectroscopic inversion ever work? Journal Article

In: J. Biomed. Opt., 24 (12), pp. 121914, 2019.

Links | BibTeX

34.

N. Huynh, F. Lucka, E. Z. Zhang, M. M. Betcke, S. R. Arridge, P. C. Beard, B. T. Cox

Single-pixel camera photoacoustic tomography Journal Article

In: J. Biomed. Opt., 24 (12), pp. 121907, 2019.

Links | BibTeX

35.

E. S. Wise, B. T. Cox, J. Jaros, B. E. Treeby

Representing arbitrary acoustic source and sensor distributions in Fourier collocation methods Journal Article

In: J. Acoust. Soc. Am., 146 (1), pp. 278-288, 2019.

Links | BibTeX

36.

M. D. Brown, E. Z. Zhang, B. E. Treeby, P. C. Beard, B. T. Cox

Reverberant cavity photoacoustic imaging Journal Article

In: Optica, 6 (6), pp. 821-822, 2019.

Links | BibTeX

37.

B. E. Treeby, J. Jaros, E. Martin, B. T. Cox

From biology to bytes: Predicting the path of ultrasound waves through the human body Journal Article

In: Acoustics Today, 15 (2), pp. 36-44, 2019.

Links | BibTeX

38.

D. R. Ramasawmy, E. Martin, J. A. Guggenheim, E. Z. Zhang, P. C. Beard, B. E. Treeby, B. T. Cox

Analysis of the Directivity of Glass-Etalon Fabry-Perot Ultrasound Sensors Journal Article

In: IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 66 (9), pp. 1504-1513, 2019.

Links | BibTeX

39.

S. Powell, B. T. Cox, S. R. Arridge

A pseudospectral method for solution of the radiative transport equation Journal Article

In: J. Comp. Phys., 384 , pp. 376-382, 2019.

Links | BibTeX

40.

E. S. Wise, B. T. Cox, B. E. Treeby

Bandwidth-based mesh adaptation in multiple dimensions Journal Article

In: J. Comp. Phys., 371 , pp. 651-662, 2018.

Links | BibTeX

41.

F. Lucka, N. Huynh, M. M. Betcke, E. Z. Zhang, P. C. Beard, B. T. Cox, S. R. Arridge

Enhancing Compressed Sensing 4D Photoacoustic Tomography by Simultaneous Motion Estimation Journal Article

In: SIAM J. Imag. Sci., 11 (4), pp. 2224-2253, 2018.

Links | BibTeX

42.

B. E. Treeby, F. Lucka, E. Martin, B. T. Cox

Equivalent-source acoustic holography for projecting measured ultrasound fields through complex media Journal Article

In: IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 65 (10), pp. 1857-1864, 2018.

Links | BibTeX

43.

J. Tick, A. Pulkkinen, F. Lucka, R. Ellwood, B. T. Cox, J. Kaipio, S. R. Arridge, T. Tarvainen

Three dimensional photoacoustic tomography in Bayesian framework Journal Article

In: J. Acoust. Soc. Am., 144 (4), pp. 2061-2071, 2018.

Links | BibTeX

44.

B. E. Treeby, E. S. Wise, B. T. Cox

Nonstandard Fourier Pseudospectral Time Domain (PSTD) Schemes for Partial Differential Equations Journal Article

In: Commun. Comput. Phys., 24 (3), pp. 623-634, 2018.

Links | BibTeX

45.

S. Rajagopal, T. Sainsbury, B. E. Treeby, B. T. Cox

Laser generated ultrasound sources using carbon-polymer nanocomposites for high frequency metrology Journal Article

In: J. Acoust. Soc. Am., 144 (2), pp. 584-597, 2018.

Links | BibTeX

46.

L. An, B. T. Cox

Estimating relative chromophore concentrations from multiwavelength photoacoustic images using independent component analysis Journal Article

In: J. Biomed. Opt., 23 (7), pp. 076007, 2018.

Links | BibTeX

47.

A. Hauptmann, F. Lucka, M. M. Betcke, N. Huynh, J. Adler, B. T. Cox, P. C. Beard, S. Ourselin, S. R. Arridge

Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography Journal Article

In: IEEE Trans. Med. Imag., 37 (6), pp. 1382-1393, 2018.

Links | BibTeX

48.

M. Bakaric, E. Martin, P. S. Georgiou, B. T. Cox, H. Payne, B. E. Treeby

Experimental study of beam distortion due to fiducial markers during salvage HIFU in the prostate Journal Article

In: Journal of Therapeutic Ultrasound, 6 (1), pp. 1-12, 2018.

Links | BibTeX

49.

B. E. Treeby, J. Budisky, E. S. Wise, J. Jaros, B. T. Cox

Rapid calculation of acoustic fields from arbitrary continuous-wave sources Journal Article

In: J. Acoust. Soc. Am., 143 (1), pp. 529-537, 2018.

Links | BibTeX

50.

M. Fonseca, L. An, P. C. Beard, B. T. Cox

Sulfates as chromophores for multiwavelength photoacoustic imaging phantoms Journal Article

In: J. Biomed. Opt., 22 (12), pp. 125007, 2017.

Links | BibTeX

51.

M. D. Brown, B. T. Cox, B. E. Treeby

Design of multi-frequency acoustic kinoforms Journal Article

In: Appl. Phys. Lett., 111 (24), pp. 244101, 2017.

Links | BibTeX

52.

L. An, T. Saratoon, M. Fonseca, R. Ellwood, B. T. Cox

Statistical independence in nonlinear model-based inversion for quantitative photoacoustic tomography Journal Article

In: Biomed. Opt. Exp., 8 (11), pp. 5297-5310, 2017.

Links | BibTeX

53.

E. S. Wise, B. T. Cox, B. E. Treeby

Mesh density functions based on local bandwidth applied to moving mesh methods Journal Article

In: Commun. Comput. Phys., 22 (5), pp. 1286-1308, 2017.

Links | BibTeX

54.

M. M. Betcke, B. T. Cox, N. Huynh, E. Z. Zhang, P. C. Beard, S. R. Arridge

Acoustic Wave Field Reconstruction From Compressed Measurements With Application in Photoacoustic Tomography Journal Article

In: IEEE Trans. Comp. Imag., 3 (4), pp. 710-721, 2017.

Links | BibTeX

55.

J. L. Robertson, B. T. Cox, J. Jaros, B. E. Treeby

Accurate simulation of transcranial ultrasound propagation for ultrasonic neuromodulation and stimulation Journal Article

In: J. Acoust. Soc. Am., 141 (3), pp. 1726-1738, 2017.

Links | BibTeX

56.

M. Perez Liva, J. L. Herraiz, J. M. Udias, E. Miller, B. T. Cox, B. E. Treeby

Time domain reconstruction of sound speed and attenuation in ultrasound computed tomography using full wave inversion Journal Article

In: J. Acoust. Soc. Am., 141 (3), pp. 1595-1604, 2017.

Links | BibTeX

57.

J. L. Robertson, E. Martin, B. T. Cox, B. E. Treeby

Sensitivity of simulated transcranial ultrasound fields to acoustic medium property maps Journal Article

In: Phys. Med. Biol., 62 (7), pp. 2559-2580, 2017.

Links | BibTeX

58.

M. D. Brown, D. I. Nikitichev, B. E. Treeby, B. T. Cox

Generating arbitrary ultrasound fields with tailored optoacoustic surface profiles Journal Article

In: Appl. Phys. Lett., 110 (9), pp. 094102, 2017.

Links | BibTeX

59.

R. Ellwood, O. Ogunlade, E. Z. Zhang, P. C. Beard, B. T. Cox

Photoacoustic tomography using orthogonal Fabry–Pérot sensors Journal Article

In: J. Biomed. Opt., 22 (4), pp. 041009, 2016.

Links | BibTeX

60.

S. R. Arridge, P. C. Beard, M. M. Betcke, B. T. Cox, N. Huynh, F. Lucka, O. Ogunlade, E. Z. Zhang

Accelerated high-resolution photoacoustic tomography via compressed sensing Journal Article

In: Phys. Med. Biol., 61 , pp. 8908–8940, 2016.

Links | BibTeX

61.

R. Hochuli, S. Powell, S. R. Arridge, B. T. Cox

Quantitative photoacoustic tomography using forward and adjoint Monte Carlo models of radiance Journal Article

In: J. Biomed. Opt., 21 (12), pp. 126004, 2016.

Links | BibTeX

62.

S. R. Arridge, M. M. Betcke, B. T. Cox, F. Lucka, B. E. Treeby

On the adjoint operator in photoacoustic tomography Journal Article

In: Inv. Problems, 32 (11), pp. 115012, 2016.

Links | BibTeX

63.

A. Pulkkinen, B. T. Cox, S. R. Arridge, H. Goh, J. Kaipio, T. Tarvainen

Direct Estimation of Optical Parameters From Photoacoustic Time Series in Quantitative Photoacoustic Tomography Journal Article

In: IEEE Trans. Med. Imag., 35 (11), pp. 2497-2508, 2016.

Links | BibTeX

64.

M. Fonseca, B. Zeqiri, P. C. Beard, B. T. Cox

Characterisation of a phantom for multiwavelength quantitative photoacoustic imaging Journal Article

In: Phys. Med. Biol., 61 , pp. 4950-4973, 2016.

Links | BibTeX

65.

M. D. Brown, J. Jaros, B. T. Cox, B. E. Treeby

Control of broadband optically generated ultrasound pulses using binary amplitude holograms Journal Article

In: J. Acoust. Soc. Am., 139 (4), pp. 1637–1467, 2016.

Links | BibTeX

66.

N. Huynh, E. Z. Zhang, M. M. Betcke, S. R. Arridge, P. C. Beard, B. T. Cox

Single-pixel optical camera for video rate ultrasonic imaging Journal Article

In: Optica, 3 (1), pp. 26-29, 2016.

Links | BibTeX

67.

E. Malone, S. Powell, B. T. Cox, S. R. Arridge

Reconstruction-classification method for quantitative photoacoustic tomography Journal Article

In: J. Biomed. Opt., 20 (12), pp. 126004, 2015.

Links | BibTeX

68.

A. Pulkkinen, B. T. Cox, S. R. Arridge, J. Kaipio, S. R. Arridge

Quantitative photoacoustic tomography using illuminations from a single direction Journal Article

In: J. Biomed. Opt., 20 (3), pp. 036015, 2015.

Links | BibTeX

69.

A. P. Jathoul, J. Laufer, O. Ogunlade, B. E. Treeby, B. T. Cox, E. Z. Zhang, P. Johnson, A. R. Pizzey, B. Philip, T. Marafioti, M. F. Lythgoe, R. B. Pedley, M. A. Pule, P. C. Beard

Deep in vivo photoacoustic imaging of mammalian tissues using a tyrosinase-based genetic reporter Journal Article

In: Nature Photonics, 9 , pp. 239–-246, 2015.

Links | BibTeX

70.

R. Ellwood, E. Z. Zhang, P. C. Beard, B. T. Cox

Photoacoustic imaging using acoustic reflectors to enhance planar arrays Journal Article

In: J. Biomed. Opt., 19 (12), pp. 126012, 2014.

Links | BibTeX

71.

B. E. Treeby, B. T. Cox

Modeling power law absorption and dispersion in viscoelastic solids using a split-field and the fractional Laplacian Journal Article

In: J. Acoust. Soc. Am., 136 (4), pp. 1499-1510, 2014.

Links | BibTeX

72.

A. Pulkkinen, V. Kolehmainen, J. Kaipio, B. T. Cox, S. R. Arridge, T. Tarvainen

Approximate marginalization of unknown scattering in quantitative photoacoustic tomography Journal Article

In: Inv. Prob. Imag., 8 (3), pp. 811-829, 2014.

Links | BibTeX

73.

A. Pulkkinen, B. T. Cox, S. R. Arridge, J. Kaipio, T. Tarvainen

A Bayesian approach to spectral quantitative photoacoustic tomography Journal Article

In: Inv. Prob., 30 , pp. 065012, 2014.

Links | BibTeX

74.

L. Kunyansky, B. Holman, B. T. Cox

Photoacoustic tomography in a rectangular reflecting cavity Journal Article

In: Inv. Prob., 29 , pp. 125010, 2013.

Links | BibTeX

75.

T. Tarvainen, A. Pulkkinen, B. T. Cox, J. Kaipio, S. R. Arridge

Bayesian Image Reconstruction in Quantitative Photoacoustic Tomography Journal Article

In: IEEE Trans. Med. Imag., 32 (12), pp. 2287-2298, 2013.

Links | BibTeX

76.

T. Saratoon, T. Tarvainen, B. T. Cox, S. R. Arridge

A gradient-based method for quantitative photoacoustic tomography using the radiative transfer equation Journal Article

In: Inv. Prob., 29 , pp. 075006, 2013.

Links | BibTeX

77.

K. Firouzi, B. T. Cox, B. E. Treeby, N. Saffari

A first-order k-space model for elastic wave propagation in heterogeneous media Journal Article

In: J. Acoust. Soc. Am., 132 (3), pp. 1271–1283, 2012.

Links | BibTeX

78.

T. Tarvainen, B. T. Cox, J. Kaipio, S. R. Arridge

Reconstructing absorption and scattering distributions in quantitative photoacoustic tomography Journal Article

In: Inv. Prob., 28 , pp. 084009, 2012.

Links | BibTeX

79.

J. Laufer, P. Johnson, E. Z. Zhang, B. E. Treeby, B. T. Cox, R. B. Pedley, P. C. Beard

In vivo preclinical photoacoustic imaging of tumour vasculature development and therapy Journal Article

In: J. Biomed. Opt., 17 (5), pp. 056016, 2012.

Links | BibTeX

80.

J. Laufer, F. C. Norris, J. Cleary, E. Z. Zhang, B. E. Treeby, B. T. Cox, P. Johnson, P. Scambler, M. F. Lythgoe, P. C. Beard

In vivo photoacoustic imaging of mouse embryos Journal Article

In: J. Biomed. Opt., 17 (6), pp. 061220, 2012.

Links | BibTeX

81.

B. E. Treeby, J. Jaros, A. P. Rendell, B. T. Cox

Modeling nonlinear ultrasound propagation in heterogeneous media with power law absorption using a k-space pseudospectral method Journal Article

In: J. Acoust. Soc. Am., 131 (6), pp. 4324–4336, 2012.

Links | BibTeX

82.

E. Z. Zhang, B. Povazay, J. Laufer, A. Alex, B. Hofer, R. B. Pedley, C. Glittenberg, B. E. Treeby, B. T. Cox, P. C. Beard, W. Drexler

Multimodal photoacoustic and optical coherence tomography scanner using an all optical detection scheme for 3D morphological skin imaging Journal Article

In: Biomed. Opt. Express, 2 (8), pp. 2202–2215, 2011.

Links | BibTeX

83.

P. Shao, B. T. Cox, R. Zemp

Estimating optical absorption, scattering, and Grueneisen distributions with multiple-illumination photoacoustic tomography Journal Article

In: Applied Optics, 50 (19), pp. 3145-3154, 2011.

Links | BibTeX

84.

B. E. Treeby, B. T. Cox

A k-space Green's function solution for acoustic initial value problems in homogeneous media with power law absorption Journal Article

In: J. Acoust. Soc. Am., 129 (6), pp. 3652–3660, 2011.

Links | BibTeX

85.

B. E. Treeby, E. Z. Zhang, A. S. Thomas, B. T. Cox

Measurement of the ultrasound attenuation and dispersion in whole human blood and its components from 0-70 MHz Journal Article

In: Ultrasound Med. Biol., 37 (2), pp. 289–300, 2011.

Links | BibTeX

86.

B. T. Cox, J. Laufer, P. C. Beard

Quantitative Photoacoustic Image Reconstruction using Fluence Dependent Chromophores Journal Article

In: Biomed. Opt. Exp., 1 (1), pp. 201-208, 2010.

Links | BibTeX

87.

B. E. Treeby, B. T. Cox

k-Wave: MATLAB toolbox for the simulation and reconstruction of photoacoustic wave-fields Journal Article

In: J. Biomed. Opt., 15 (2), pp. 021314, 2010.

Links | BibTeX

88.

J. Laufer, B. T. Cox, E. Z. Zhang, P. C. Beard

Quantitative determination of chromophore concentrations from 2D photoacoustic images using a nonlinear model-based inversion scheme Journal Article

In: Applied Optics, 49 (8), pp. 1219-1233, 2010.

Links | BibTeX

89.

B. T. Cox, B. E. Treeby

Artifact trapping during time reversal photoacoustic imaging for acoustically heterogeneous media Journal Article

In: IEEE Trans. Med. Imaging, 29 (2), pp. 387–396, 2010.

Links | BibTeX

90.

B. E. Treeby, B. T. Cox

Modeling power law absorption and dispersion for acoustic propagation using the fractional Laplacian Journal Article

In: J. Acoust. Soc. Am., 127 (5), pp. 2741–2748, 2010.

Links | BibTeX

91.

B. E. Treeby, E. Z. Zhang, B. T. Cox

Photoacoustic tomography in absorbing acoustic media using time reversal Journal Article

In: Inverse Probl., 26 (11), pp. 115003, 2010.

Links | BibTeX

92.

B. E. Treeby, B. T. Cox, E. Z. Zhang, S. K. Patch, P. C. Beard

Measurement of broadband temperature-dependent ultrasonic attenuation and dispersion using photoacoustics Journal Article

In: IEEE Trans. Ultrason. Ferroelectr. Freq. Control, 56 (8), pp. 1666–1676, 2009.

Links | BibTeX

93.

B. T. Cox, S. R. Arridge, P. C. Beard

Estimating chromophore distributions from multiwavelength photoacoustic images Journal Article

In: J. Opt. Soc. Am. A, 26 (2), pp. 443-455, 2009.

Links | BibTeX

94.

B. T. Cox, P. C. Beard

Photoacoustic tomography with a single detector in a reverberant cavity Journal Article

In: J. Acoust. Soc. Am., 125 (3), pp. 1426-1436, 2008.

Links | BibTeX

95.

B. T. Cox, S. R. Arridge, P. C. Beard

Photoacoustic tomography with a limited-aperture planar sensor and a reverberant cavity Journal Article

In: Inv. Prob., 23 , pp. S95-S112, 2007.

Links | BibTeX

96.

B. T. Cox, S. Kara, S. R. Arridge, P. C. Beard

k-space propagation models for acoustically heterogeneous media: Application to biomedical photoacoustics Journal Article

In: J. Acoust. Soc. Am., 121 (6), pp. 3453–3464, 2007.

Links | BibTeX

97.

B. T. Cox, P. C. Beard

The Frequency-Dependent Directivity of a Planar Fabry-Perot Polymer Film Ultrasound Sensor Journal Article

In: IEEE Trans. Ultra. Ferro. Freq. Cont., 52 (2), pp. 394-404, 2006.

Links | BibTeX

98.

B. T. Cox, S. R. Arridge, K. Koestli, P. C. Beard

Two-dimensional quantitative photoacoustic image reconstruction of absorption distributions in scattering media by use of a simple iterative method Journal Article

In: Applied Optics, 45 (8), pp. 1866-1875, 2005.

Links | BibTeX

99.

B. T. Cox, P. C. Beard

Fast calculation of pulsed photoacoustic fields in fluids using k-space methods Journal Article

In: J. Acoust. Soc. Am., 117 (6), pp. 3616–3627, 2005.

Links | BibTeX

Conference Publications

1.

M. Roberts, E. Martin, M. D. Brown, B. T. Cox, B. E. Treeby

Matching Layer Deposition for an Open-Source Ultrasound Tomography System: Inter-Element Variation in Frequency Response Conference

2022 IEEE International Ultrasonics Symposium (IUS), 2022.

Links | BibTeX

2.

A. Stanziola, S. R. Arridge, B. T. Cox, B. E. Treeby

A research framework for writing differentiable PDE discretizations in JAX Conference

35th Conference on Neural Information Processing Systems (NeurIPS 2021), 2021.

Links | BibTeX

3.

M. Roberts, E. Martin, M. D. Brown, B. T. Cox, B. E. Treeby

Transducer Module Development for an Open-Source Ultrasound Tomography System Conference

2021 IEEE International Ultrasonics Symposium (IUS), 2021.

Links | BibTeX

4.

C. Bench, B. T. Cox

Quantitative photoacoustic estimates of intervascular blood oxygenation differences using linear unmixing Conference

1761 , 2021, (Anglo-French Physical Acoustics Conference AFPAC 2020).

Links | BibTeX

5.

C. Bench, B. T. Cox

Quantitative photoacoustic estimates of intervascular blood oxygenation differences using linear unmixing Conference

Anglo-French Physical Acoustics Conference (AFPAC) 2020, 2021.

Links | BibTeX

6.

M. Bakaric, B. Zeqiri, B. T. Cox, B. E. Treeby

Test materials for characterising heating from HIFU devices using photoacoustic thermometry Conference

Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing 2020, 11240 , 2020.

Links | BibTeX

7.

M. Roberts, E. Martin, B. T. Cox, B. E. Treeby

Progress towards an open-source, low-cost ultrasound computed tomography research system Conference

The 2nd International Workshop on Medical Ultrasound Tomography (MUST 2019), KIT Press, 2019.

Links | BibTeX

8.

M. Bakaric, A. Ivory, B. Zeqiri, B. T. Cox, B. E. Treeby

Measurement of the temperature-dependent speed of sound and change in Gruneisen parameter of tissue-mimicking materials Conference

IEEE International Ultrasonics Symposium, 2019.

Links | BibTeX

9.

D. R. Ramasawmy, B. T. Cox, B. E. Treeby

The influence of strain-optic coefficients on the transduction mechanism of planar glass etalon Fabry-Perot ultrasound sensors Conference

IEEE International Ultrasonics Symposium, 2019.

Links | BibTeX

10.

B. T. Cox, B. E. Treeby

Accurate time-varying sources in k-space pseudospectral time domain acoustic simulations Conference

IEEE International Ultrasonics Symposium, 2018.

Links | BibTeX

11.

M. D. Brown, B. T. Cox, B. E. Treeby

Investigating the effect of thickness and frequency spacing on multi-frequency acoustic kinoforms Conference

IEEE International Ultrasonics Symposium, 2017.

Links | BibTeX

12.

S. Rajagopal, T. Sainsbury, B. E. Treeby, B. T. Cox

Laser generated ultrasound sources using polymer nanocomposites for high frequency metrology Conference

IEEE International Ultrasonics Symposium, 2017.

Links | BibTeX

13.

E. S. Wise, J. L. Robertson, B. T. Cox, B. E. Treeby

Staircase-free acoustic sources for grid-based models of wave propagation Conference

IEEE International Ultrasonics Symposium, 2017.

Links | BibTeX

14.

D. R. Ramasawmy, E. Martin, J. A. Guggenheim, B. T. Cox, B. E. Treeby

Directivity of a planar hard-dielectric Fabry-Perot optical ultrasound sensor Conference

IEEE International Ultrasonics Symposium, 2017.

Links | BibTeX

15.

M. D. Brown, E. Martin, B. T. Cox, B. E. Treeby

Single pulse illumination of multi-layer photoacoustic holograms for patterned ultrasound field generation Conference

IEEE International Ultrasonics Symposium, 2016.

Links | BibTeX

16.

M. Perez Liva, J. L. Herraiz, J. M Udias, B. T. Cox, B. E. Treeby

Full-wave attenuation reconstruction in the time domain for ultrasound computed tomography Conference

IEEE 13th International Symposium on Biomedical Imaging (ISBI), 2016.

Links | BibTeX

17.

B. E. Treeby, J. Jaros, B. T. Cox

Advanced photoacoustic image reconstruction using the k-Wave toolbox Conference

Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 9708 , 2016.

Links | BibTeX

18.

E. S. Wise, B. T. Cox, B. E. Treeby

A monitor function for spectral moving mesh methods applied to nonlinear acoustics Conference

International Symposium on Nonlinear Acoustics (AIP Conference Proceedings), 1685 , 2015.

Links | BibTeX

19.

M. D. Brown, T. J. Allen, B. T. Cox, B. E. Treeby

Control of optically generated ultrasound fields using binary amplitude holograms Conference

IEEE International Ultrasonics Symposium, 2014.

Links | BibTeX

20.

J. L. Robertson, B. T. Cox, B. E. Treeby

Quantifying numerical errors in the simulation of transcranial ultrasound using pseudospectral methods Conference

IEEE International Ultrasonics Symposium, 2014.

Links | BibTeX

21.

B. E. Treeby, J. Jaros, D. Rohrbach, B. T. Cox

Modelling elastic wave propagation using the k-Wave MATLAB toolbox Conference

IEEE International Ultrasonics Symposium, 2014.

Links | BibTeX

22.

B. E. Treeby, B. T. Cox

A computationally efficient elastic wave model for media with power-law absorption Conference

IEEE International Ultrasonics Symposium, 2013.

Links | BibTeX

23.

B. E. Treeby, M. Tumen, B. T. Cox

Time domain simulation of harmonic ultrasound images and beam patterns in 3D using the k-space pseudospectral method Conference

14th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Part I, LNCS, 6891 , 2011.

Links | BibTeX

24.

J. Laufer, P. Johnson, E. Z. Zhang, B. E. Treeby, B. T. Cox, R. B. Pedley, P. C. Beard

In vivo longitudinal photoacoustic imaging of subcutaneous tumours in mice Conference

Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 7899 , 2011.

Links | BibTeX

25.

B. E. Treeby, J. Laufer, E. Z. Zhang, F. C. Norris, M. F. Lythgoe, P. C. Beard, B. T. Cox

Acoustic attenuation compensation in photoacoustic tomography: Application to high resolution 3D imaging of vascular networks in mice Conference

Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 7899 , 2011.

Links | BibTeX

26.

B. T. Cox, B. E. Treeby

Effect of sensor directionality on photoacoustic imaging: a study using the k-Wave toolbox Conference

Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 7564 , 2010.

Links | BibTeX

27.

B. E. Treeby, B. T. Cox

Fast, tissue-realistic models of photoacoustic wave propagation for homogeneous attenuating media Conference

Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 7177 , 2009.

Links | BibTeX

28.

B. T. Cox, J. Laufer, K. P. Kostli, P. C. Beard

Experimental validation of photoacoustic k-space propagation models Conference

Proc. SPIE, Photons Plus Ultrasound: Imaging and Sensing, 5320 , 2004.

Links | BibTeX

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